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Report for CCDS28249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28249.1 Public Mus musculus 16 Or5ac16 23 108 98 CCDS HistoryNCBI Gene:258036Re-query CCDS DB by CCDS ID:28249.1Re-query CCDS DB by GeneID:258036See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064452.2 ENSMUSP00000065535.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064452.2Link to Ensembl Protein Viewer:ENSMUSP00000065535.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000064452Re-query CCDS DB by Protein ID:ENSMUSP00000065535
Original member Current member EBI ENSMUST00000208244.2 ENSMUSP00000146813.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208244.2Link to Ensembl Protein Viewer:ENSMUSP00000146813.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000208244Re-query CCDS DB by Protein ID:ENSMUSP00000146813
Original member Current member NCBI NM_001011808.1 NP_001011808.1 Accepted alive Link to Nucleotide Sequence:NM_001011808.1Link to Protein Sequence:NP_001011808.1Re-query CCDS DB by Nucleotide ID:NM_001011808Re-query CCDS DB by Protein ID:NP_001011808Link to BLAST:NP_001011808.1

Chromosomal Locations for CCDS 28249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59201504 59202424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGACAGTAGAAAACCAGACTGTGGTGGCAGTGTTTGTTCTCACAGGACTCACTGAGAGACCCGAGTTGC
AGGTTCCCCTCTTCCTGGTTTTCTTCACCATCTACCTCATCACCATGGTGGGCAACCTTGGGCTCATTGC
TCTCATCTGGAAGGACCCTCACCTCCACACTCCCATGTACTTATTTCTGGGAAGCTTAGCTTTTGCAGAC
GCCTGTGCTTCATCTTCTGTGACTCCCAAGATGCTTGTCAATTTTTTATCTAAGGATCACAGAACATTCT
TGGTTGAGTGCTTCACCCAGTTTTATTTCTTTGGTTCCAGTGCAACGACAGAATGTTTCCTACTGTCAGT
GATGGCCTATGACCGCTATGTGGCCATATGCAACCCTTTGCTTTATCCAGTGATGATGTCCAATAGCCTC
TGTATGAAATTTATACATGTTTCATATATTGTAGGTTTTCTACATTCAGCAATTCATGTGGGCTTGTTAG
TGAGATTAAATTTCTGCAAGTCCAACATCATACACTATTTCTACTGTGAAATCTTGCAGTTATTCAAAAT
TTCCTGCACTGATCCTACAATGAACGTCCTTCTGGTTTTAATATTTTCAGCTTTGATACAAGGCTTGACT
TTTATGACTATTATCGTCTCCTACTTCTCTGTCCTTCTTGCCATCCTGAAAACAAAGTCTGAGAGGGGCA
GACGCAAAGCCTTCTCCACCTGCAGTGCTCACCTGCTCTCCGTGTCTCTGTTCTATGGCACACTTTTCCT
CATGTATGTGCGTCCCGGGTCTGGATCAGGTGAAGATAAGGACAGAATGTATTCTTTATTTTACACAATA
ATAATTCCCTTTCTAAATCCTTTTATATACAGTCTGAGGAACAAAGAGGTAACAGCTGCTCTGCGAAGAA
AAATGAAATAA

Translation (306 aa):
MTVENQTVVAVFVLTGLTERPELQVPLFLVFFTIYLITMVGNLGLIALIWKDPHLHTPMYLFLGSLAFAD
ACASSSVTPKMLVNFLSKDHRTFLVECFTQFYFFGSSATTECFLLSVMAYDRYVAICNPLLYPVMMSNSL
CMKFIHVSYIVGFLHSAIHVGLLVRLNFCKSNIIHYFYCEILQLFKISCTDPTMNVLLVLIFSALIQGLT
FMTIIVSYFSVLLAILKTKSERGRRKAFSTCSAHLLSVSLFYGTLFLMYVRPGSGSGEDKDRMYSLFYTI
IIPFLNPFIYSLRNKEVTAALRRKMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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