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Report for CCDS28247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28247.1 Public Mus musculus 16 Or5k3 23 108 98 CCDS HistoryNCBI Gene:259000Re-query CCDS DB by CCDS ID:28247.1Re-query CCDS DB by GeneID:259000See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075381.2 ENSMUSP00000073737.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075381.2Link to Ensembl Protein Viewer:ENSMUSP00000073737.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075381Re-query CCDS DB by Protein ID:ENSMUSP00000073737
Original member Current member EBI ENSMUST00000216957.2 ENSMUSP00000150249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216957.2Link to Ensembl Protein Viewer:ENSMUSP00000150249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216957Re-query CCDS DB by Protein ID:ENSMUSP00000150249
Original member Current member NCBI NM_146998.1 NP_667209.1 Accepted alive Link to Nucleotide Sequence:NM_146998.1Link to Protein Sequence:NP_667209.1Re-query CCDS DB by Nucleotide ID:NM_146998Re-query CCDS DB by Protein ID:NP_667209Link to BLAST:NP_667209.1

Chromosomal Locations for CCDS 28247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59148852 59149778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCTGAGAACAACTATTCTGTGACAAATGAATTCATCCTGGTGGGGTTCTCAGATCACCCAGACTTGA
AGACACCTCTGTTCCTGGTGTTCTCTGCCATCTATCTGGTCACCATGGTGGGGAATCTAGGGCTGGTGGC
CTTGATCTATATGGAGCCTCGTCTCCACACACCCATGTACATCTTTCTGGGCAACCTGGCTCTGATGGAC
TCCTGCTGCTCTTGTGCCATCACTCCGAAGATGCTAGAGAACTTCTTTTCTGTGGACAGAAGGATTTCTC
TCTATGAGTGCATGGTACAGTTCTATTTTCTCTGTCTTGCTGAAACTACAGACTGCTTTCTTCTGGCAGC
AATGGCCTATGACCGCTATGTGGCCATATGCAACCCACTGCAGTACCACAGCATGATGTCCAAGAAGCTC
TGCCTTCAAATGACCATGGGATCCTACATAGCAGGAAACCTGCATCCTATGATTGAAGTAGGGCTTTTGT
TGAGGTTAACTTTCTGCAGGTCTCATGTAATCAAGCACTTTTTTTGTGATGTCCTTCCATTATACAGAAT
CTCCTGTACTGATCCAAATATCAATGAACTGATATTACTTGTCTTGGCAGGTTCAATTCAAGTCTTTACT
ATCTCCATAGTTCTAGTGTCTTACTCCTGTATCCTTTTCACTATATTCACAATGAAATCTAAAGAGGGTA
GAGGCAAAGCCTTATCAACATGCGCTTCCCACTTTCTGTCTGTGTCAATATTCTATGGGTCTCTTCTCTT
CATGTATGCTCAACCACATTCAGCCAATGAAGGAGACAAAGATATGCCAGTAGCTATTTTTTATACTCTT
ATAATTCCTTTGTTAAACCCTTTCATTTACAGTCTAAGAAATAAGGAAGTAATAAATGTAATGAAAAAAA
CTATGAAAAGGAGATAA

Translation (308 aa):
MAENNYSVTNEFILVGFSDHPDLKTPLFLVFSAIYLVTMVGNLGLVALIYMEPRLHTPMYIFLGNLALMD
SCCSCAITPKMLENFFSVDRRISLYECMVQFYFLCLAETTDCFLLAAMAYDRYVAICNPLQYHSMMSKKL
CLQMTMGSYIAGNLHPMIEVGLLLRLTFCRSHVIKHFFCDVLPLYRISCTDPNINELILLVLAGSIQVFT
ISIVLVSYSCILFTIFTMKSKEGRGKALSTCASHFLSVSIFYGSLLFMYAQPHSANEGDKDMPVAIFYTL
IIPLLNPFIYSLRNKEVINVMKKTMKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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