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Report for CCDS28129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28129.1 Public Mus musculus 16 Snx4 23 108 98 CCDS HistoryNCBI Gene:69150Re-query CCDS DB by CCDS ID:28129.1Re-query CCDS DB by GeneID:69150See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023502.5 ENSMUSP00000023502.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023502.5Link to Ensembl Protein Viewer:ENSMUSP00000023502.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023502Re-query CCDS DB by Protein ID:ENSMUSP00000023502
Original member Current member NCBI NM_080557.2 NP_542124.1 Accepted alive Link to Nucleotide Sequence:NM_080557.2Link to Protein Sequence:NP_542124.1Re-query CCDS DB by Nucleotide ID:NM_080557Re-query CCDS DB by Protein ID:NP_542124Link to BLAST:NP_542124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542124.1 450 Q91YJ2 450 100% 0 0

Chromosomal Locations for CCDS 28129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33251461 33251601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33264259 33264380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33266750 33266885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33268018 33268167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33269656 33269703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33276942 33276997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33280633 33280705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33284410 33284471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33285987 33286052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33287692 33287781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33290099 33290198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33291741 33291886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33294641 33294755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33298431 33298478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGAGCAGGCACCTCCGGACCCCGAGAAGCTCTTGCAGCCTGGACCCCTGGAGCCGCTGGGTGGCCCTG
GCGCTGTGCTGGAGGCCGCGGTCGGTGAGGAGAACGAGGGCACCCGAGAAGACGGCTCAGGGGTCGACAC
GATGACGGGAAATAATTTTTGGTTGAAGAAAATAGAAATCAGTGTTTCAGAAGCAGAGAAGAGAACCGGA
AGGAACGCCGTGAACATGCAAGAAACGTACACTGCCTACCTCATCGAGACTCGGTCAGTTGAGCATGCCG
ATGGTCAGAGTGTGCTCACAGACTCGCTGTGGAGGCGGTACAGTGAGTTCGAGTTGTTGAGAAACTACCT
TCTAGTGTACTACCCACATGTTGTTGTGCCACCTCTCCCAGAAAAGCGGGCAGAGTTCGTGTGGCATAAA
CTCTCTGCTGACAACATGGACCCAGACTTTGTGGAGAGACGACGCGTGGGCTTAGAAAACTTCCTCTTGA
GGGTTGCTTCACATCCTGTCCTTTGTAGAGACAAAATCTTCTATTCATTTTTAACCCAGGAAGGTAACTG
GAAGGAGACTGTGAATGAGACTGGATTTCAGCTGAAGGCAGACTCCAGGTTAAAAGCGCTTAATGCAACA
TTCAGAGTGAAAAACCCAGACAAGAGGTTTACTGAGCTGAGGCACTACAGTGATGAGCTGCAGTCTGTCA
TCTCGCATCTCCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAA
TTATGGGAGAGTTTTTAGTGAATGGAGTGCCATCGAAAAAGAAATGGGGGATGGGCTGCAGAGTGCTGGG
CATCACATGGACGTGTATGCATCTTCTATTGATGATATTTTGGAAGATGAAGAGCACTATGCAGATCAGC
TGAAGGAGTATCTGTTTTATGCAGAAGCACTTCGGGCTGTGTGCAGGAAGCATGAGCTTATGCAGTATGA
CCTGGAGACAGCTGCTCAAGACCTGGCTGCCAAGAAGCAGCAGTGCGAGGAGCTGGCCACCGGGACTGTG
AGAACATTCTCGTTGAAGGGAATGACTACCAAACTCTTTGGTCAAGAAACTCCAGAGCAAAGAGAAGCCA
GGATAAAGGTGCTAGAGGAGCAGATAAATGAAGGGGAACAGCAGCTGAAGTCTAAAAATCTGGAAGGCAG
AGAATTTGTGAAAAATGCATGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGGGACCTAAAGGAA
GCTCTCATCAGCTATGCTGTCATGCAGATCAGCATGTGCAAAAAGGGAATTCAGGTTTGGACCAATGCTA
AAGAATGCTTCAGCAAGATGTAA

Translation (450 aa):
MEQAPPDPEKLLQPGPLEPLGGPGAVLEAAVGEENEGTREDGSGVDTMTGNNFWLKKIEISVSEAEKRTG
RNAVNMQETYTAYLIETRSVEHADGQSVLTDSLWRRYSEFELLRNYLLVYYPHVVVPPLPEKRAEFVWHK
LSADNMDPDFVERRRVGLENFLLRVASHPVLCRDKIFYSFLTQEGNWKETVNETGFQLKADSRLKALNAT
FRVKNPDKRFTELRHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAG
HHMDVYASSIDDILEDEEHYADQLKEYLFYAEALRAVCRKHELMQYDLETAAQDLAAKKQQCEELATGTV
RTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLKE
ALISYAVMQISMCKKGIQVWTNAKECFSKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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