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Report for CCDS27839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27839.1 Public Mus musculus 15 Csrnp2 23 108 98 CCDS HistoryNCBI Gene:207785Re-query CCDS DB by CCDS ID:27839.1Re-query CCDS DB by GeneID:207785See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061457.6 ENSMUSP00000052144.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061457.6Link to Ensembl Protein Viewer:ENSMUSP00000052144.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061457Re-query CCDS DB by Protein ID:ENSMUSP00000052144
Original member Current member NCBI NM_153407.2 NP_700456.1 Accepted alive Link to Nucleotide Sequence:NM_153407.2Link to Protein Sequence:NP_700456.1Re-query CCDS DB by Nucleotide ID:NM_153407Re-query CCDS DB by Protein ID:NP_700456Link to BLAST:NP_700456.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700456.1 534 Q8BGQ2 534 100% 0 0

Chromosomal Locations for CCDS 27839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100481804 100482700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100484450 100484746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100487945 100488204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100489435 100489585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGATGCGTTCTCCGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCA
ACTCAGATGATGAGATGTCCAGCAGTGATAGTGCGGACAGCTGCGACAGCCTTAACCCTCCTACGACTGC
CAGCTTCACACCAACATCCATCCTGAAGAGGCAGAAGCAGCTACGGAGGAAGAATGTCCGCTTTGACCAG
GTGACTGTGTACTACTTCGCCCGGCGACAGGGCTTCACCAGCGTGCCCAGCCAGGGTGGGAGCTCCTTGG
GAATGGCCCAACGCCATAACTCTGTACGCAGCTACACCCTCTGTGAGTTTGCGCAAGAGCAGGAGGTGAA
CCATAGAGAGATTCTCCGTGAGCACCTGAAGGAGGAGAAACTTCACGCCAAGAAAATGAAGCTGACGAAG
AACGGGACCGTGGAGTCAGTGGAGGCCGACGGCTTGACACTCGATGATGTCTCGGACGAGGACATCGACG
TGGAGAATGTGGAGGTGGACGACTACTTCTTCCTTCAGCCCCTGCCCACCAAACGGCGGCGGGCCCTGCT
CAGGGCTTCCGGGGTCCACCGGATTGACGCCGAAGAGAAGCAAGAACTCAGAGCCATCCGCCTGTCTCGG
GAAGAGTGTGGTTGTGACTGTCGGCTGTACTGTGACCCAGAGGCATGCGCCTGTAGCCAGGCTGGGATTA
AATGCCAGGTGGATCGAATGTCTTTTCCGTGTGGCTGCTCCAGGGATGGCTGTGGAAACATGGCTGGGCG
AATTGAGTTTAACCCGATCCGAGTGCGGACTCACTACCTCCACACCATCATGAAGCTGGAGCTGGAGAGC
AAGCGGCAGGTGAGTCGCCCAGCAGCAGAGGAGGAGCCCCTGCCGGGAGCGCAGAGCTCGCAGACACAGG
ACTTCCAGGAGTTCATCGCCGAGAACGAGACTGCAGTGATGCATCTGCAGAGTGCAGAGGAGCTGGAGCG
GCTCAAGGCCGAGGAGGACTCGAGTGGCTCTAGCGCTAGCCTGGACTCCAGCATGGAGAGCCTGGGCGTG
TGCATCCTGGAGGAACCCCTGGCTGTTCCCCAAGAGCTGTGCCCAGGCCTCGCGGCCCCCATTCTCATCC
AGGCTCAGCTGCCCCCAGGTTCCTCCGTCCTGTGTTTTACTGAGAACTCAGAACACCCAGCTGCCTCCCC
GATGAGCAGCCCGTCTTACTTGAACAGTGGACCTCTGGTGTACTACCAGGTAGAGCAGAGGCCAGTGGTG
GGAGTGAAAGCAGAGTCCGGGTCAGAGGAAGGCCCAGCCTCCTTCCCCAAAGAGAAAGATCTGAGTGTTT
TCTCGCTCCCTGTTACCTCACTGGTGGCTTGCGGCCCTTCAGCCTCAGCTGCTCTCTGTAAGCCAGAGGT
GGGGAAAACATCCAGCCTCAACAAACTCCTGCCCGAGGACTGCGGCCTTAAGGAGCCTGAGAGCGAGGAC
TTGCACCCCTCTTGGTCTCCCTCAAGCCTACCCTTCCGAACGGACAATGAAGAAGGCTGCGGAGTGCAGA
ACTCCCAGCAGAGTGAGGACCGGACCTCTGAAGACTCAGCCCTAGAACTCCCTCTGGCAGTGTGA

Translation (534 aa):
MDAFSGSGLKRKFDDVDVGSSVSNSDDEMSSSDSADSCDSLNPPTTASFTPTSILKRQKQLRRKNVRFDQ
VTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTK
NGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRLSR
EECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELES
KRQVSRPAAEEEPLPGAQSSQTQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLDSSMESLGV
CILEEPLAVPQELCPGLAAPILIQAQLPPGSSVLCFTENSEHPAASPMSSPSYLNSGPLVYYQVEQRPVV
GVKAESGSEEGPASFPKEKDLSVFSLPVTSLVACGPSASAALCKPEVGKTSSLNKLLPEDCGLKEPESED
LHPSWSPSSLPFRTDNEEGCGVQNSQQSEDRTSEDSALELPLAV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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