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Report for CCDS27678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27678.1 Public Mus musculus 15 Pmm1 23 108 98 CCDS HistoryNCBI Gene:29858Re-query CCDS DB by CCDS ID:27678.1Re-query CCDS DB by GeneID:29858See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023112.11 ENSMUSP00000023112.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023112.11Link to Ensembl Protein Viewer:ENSMUSP00000023112.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023112Re-query CCDS DB by Protein ID:ENSMUSP00000023112
Original member Current member NCBI NM_013872.4 NP_038900.1 Accepted alive Link to Nucleotide Sequence:NM_013872.4Link to Protein Sequence:NP_038900.1Re-query CCDS DB by Nucleotide ID:NM_013872Re-query CCDS DB by Protein ID:NP_038900Link to BLAST:NP_038900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038900.1 262 O35621 262 100% 0 0

Chromosomal Locations for CCDS 27678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81951490 81951612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81951924 81952039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81952725 81952800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81955649 81955748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81956169 81956260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81956362 81956438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81957793 81957910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81960715 81960801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGCAGTCGCCGTCGAGGGCGCCCGCAGGAAAGAGCGCATCCTCTGCCTGTTTGACGTGGACGGGACCC
TCACGCCAGCTCGCCAGAAAATTGACCCTGAGGTATCGGCCTTCCTGCAGAAGCTACGAAGCAGGGTACA
GATCGGCGTGGTGGGTGGCTCTGACTACTCTAAGATCGCCGAGCAGCTGGGAGAGGGGGATGAAGTCATT
GAGAAGTTTGACTACGTGTTTGCTGAGAATGGGACAGTGCAGTATAAACACGGACGGCTACTCTCCAAAC
AGACGATCCAGAACCACCTGGGGGAGGAGCTCCTGCAGGACTTGATCAACTTCTGCCTTAGCTACATGGC
CCTGCTCAGACTGCCCAAGAAGCGTGGGACCTTCATTGAGTTCCGGAATGGCATGCTGAACGTCTCGCCC
ATTGGCCGCAGCTGCACCCTGGAGGAGAGGATCGAGTTCTCGGAACTGGACAAGAAGGAGAAGATCCGGG
AGAAGTTTGTGGAAGCCTTGAAGACAGAGTTTGCTGGCAAGGGGCTGCGGTTCTCCCGAGGAGGCATGAT
AAGCTTCGATGTCTTCCCCGAGGGCTGGGATAAGCGCTACTGCCTGGACAGCCTGGATGAAGACAGCTTT
GACATCATCCACTTCTTTGGAAATGAGACCAGTCCTGGCGGGAATGACTTTGAGATCTATGCGGACCCCC
GGACTGTCGGCCATAGCGTGGTCTCCCCTCAGGACACTGTACAGCGATGCCGTGAGCTCTTCTTCCCAGA
GACAGCCCACGAGGCGTGA

Translation (262 aa):
MAVAVEGARRKERILCLFDVDGTLTPARQKIDPEVSAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVI
EKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNVSP
IGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDEDSF
DIIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQDTVQRCRELFFPETAHEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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