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Report for CCDS27511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27511.1 Public Mus musculus 15 St3gal1 23 108 98 CCDS HistoryNCBI Gene:20442Re-query CCDS DB by CCDS ID:27511.1Re-query CCDS DB by GeneID:20442See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092640.5 ENSMUSP00000090307.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092640.5Link to Ensembl Protein Viewer:ENSMUSP00000090307.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092640Re-query CCDS DB by Protein ID:ENSMUSP00000090307
Original member Current member EBI ENSMUST00000229028.1 ENSMUSP00000154853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229028.1Link to Ensembl Protein Viewer:ENSMUSP00000154853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229028Re-query CCDS DB by Protein ID:ENSMUSP00000154853
Original member Current member EBI ENSMUST00000229213.1 ENSMUSP00000155359.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229213.1Link to Ensembl Protein Viewer:ENSMUSP00000155359.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229213Re-query CCDS DB by Protein ID:ENSMUSP00000155359
Original member NCBI NM_009177.4 NP_033203.1 Updated not alive Link to Nucleotide Sequence:NM_009177.4Link to Protein Sequence:NP_033203.1Re-query CCDS DB by Nucleotide ID:NM_009177Re-query CCDS DB by Protein ID:NP_033203
Current member NCBI NM_009177.5 NP_033203.1 Accepted alive Link to Nucleotide Sequence:NM_009177.5Link to Protein Sequence:NP_033203.1Re-query CCDS DB by Nucleotide ID:NM_009177Re-query CCDS DB by Protein ID:NP_033203Link to BLAST:NP_033203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033203.1 337 P54751 337 100% 0 0

Chromosomal Locations for CCDS 27511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 67106657 67106830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67108209 67108328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67109606 67109651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67111232 67111411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67112431 67112627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67113507 67113803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGAGGAGGAAGACCCTCAAGTACCTCACCTTCTTCCTGCTCTTCATCTTCCTCACTTCCTTTGTCCTGA
ATTACTCCAACACGGGAGTACCCAGTGCCTGGTTCCCCAAGCAGATGCTCCTGGAACTCTCAGAGAACTT
CCGCAGGTTCATCAAGTCACAGCCGTGCACCTGCAGACACTGCATCAGCCAGGACAAGGTATCATATTGG
TTCGACCAGCGCTTCAACAAGACTATGCAGCCCCTGCTGACAGTCCACAACGCTCTGATGGAGGAGGACA
CATACCGGTGGTGGCTGAGGCTCCAGCGGGAGAGGAAACCCAACAACCTGAGCGACACCGTCAAGGAACT
GTTTCGCCTGGTGCCTGGCAATGTGGATCCTATGTTGAACAAGAGGCTGGTGGGCTGCCGACGCTGTGCA
GTTGTAGGAAACTCCGGTAACCTGAAGGACTCCTCGTATGGGCCTGAGATCGACAGCCATGACTTTGTGC
TGAGGATGAACAAGGCACCCACAGTGGGTTTTGAGGCAGACGTTGGGAGCCGGACCACCCACCATCTCGT
GTATCCTGAGAGCTTCCGGGAGCTGGGAGAGAATGTCAACATGGTCCTGGTCCCCTTCAAGACCACCGAC
CTGCAGTGGGTGATCAGCGCCACCACCACAGGCACCATCACTCACACCTATGTCCCCGTGCCCCCGAAGA
TCAAAGTGAAACAAGAGAAGATCCTGATCTACCACCCAGCCTTCATCAAGTATGTCTTTGACAACTGGCT
TCAGGGCCATGGGCGGTATCCATCGACTGGCATCCTCTCCATCATCTTCTCCATTCATATCTGTGATGAG
GTGGACTTATATGGTTTTGGGGCAGACAGCAAAGGAAATTGGCACCATTACTGGGAGAACAACCCATCAG
CGGGTGCCTTCCGAAAGACGGGGGTTCACGATGGTGACTTCGAGTACAACATCACAACTACCCTGGCAGC
CATCAATAAAATCCGCATCTTCAAGGGGAGATGA

Translation (337 aa):
MRRKTLKYLTFFLLFIFLTSFVLNYSNTGVPSAWFPKQMLLELSENFRRFIKSQPCTCRHCISQDKVSYW
FDQRFNKTMQPLLTVHNALMEEDTYRWWLRLQRERKPNNLSDTVKELFRLVPGNVDPMLNKRLVGCRRCA
VVGNSGNLKDSSYGPEIDSHDFVLRMNKAPTVGFEADVGSRTTHHLVYPESFRELGENVNMVLVPFKTTD
LQWVISATTTGTITHTYVPVPPKIKVKQEKILIYHPAFIKYVFDNWLQGHGRYPSTGILSIIFSIHICDE
VDLYGFGADSKGNWHHYWENNPSAGAFRKTGVHDGDFEYNITTTLAAINKIRIFKGR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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