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Report for CCDS27128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27128.1 Public Mus musculus 14 Ltb4r2 23 108 98 CCDS HistoryNCBI Gene:57260Re-query CCDS DB by CCDS ID:27128.1Re-query CCDS DB by GeneID:57260See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044554.4 ENSMUSP00000048358.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044554.4Link to Ensembl Protein Viewer:ENSMUSP00000048358.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044554Re-query CCDS DB by Protein ID:ENSMUSP00000048358
Original member NCBI NM_020490.2 NP_065236.1 Updated not alive Link to Nucleotide Sequence:NM_020490.2Link to Protein Sequence:NP_065236.1Re-query CCDS DB by Nucleotide ID:NM_020490Re-query CCDS DB by Protein ID:NP_065236
Current member NCBI NM_020490.3 NP_065236.1 Accepted alive Link to Nucleotide Sequence:NM_020490.3Link to Protein Sequence:NP_065236.1Re-query CCDS DB by Nucleotide ID:NM_020490Re-query CCDS DB by Protein ID:NP_065236Link to BLAST:NP_065236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065236.1 360 Q9JJL9 360 100% 0 0

Chromosomal Locations for CCDS 27128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55761924 55763006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGTCTGTCTGCTACCGTCCGCCTGGGAATGAGACACTACTGAGCTGGAAGGGCTCGCGGGCCACCGGCA
CTGCCTTTCTACTGCTGGCGGCGTTGCTGGGACTGCCAGGCAATGGCTTCGTAGTATGGAGCTTAGCGGG
CTGGCGGCCCACGGCGGGCCGGCCACTGGCGGCCACACTTGTGCTGCACCTGGCCCTGGCCGACGGCGCG
GTGCTGCTGCTCACGCCGCTCTTTGTGGCTTTCCTCAGCCAAGAGGCTTGGCCCTTGGGCCAGGTGGGCT
GCAAGGCGGTGTACTACGTGTGCGCGCTCAGCATGTACGCCAGCGTGCTGCTCACCGGCCTGCTCAGCCT
GCAGCGCTGCCTGGCTGTCACTCGGCCCTTCCTGGCTCCCCGACTGCGCAGCCCGGCCCTGGCCCGCCGC
TTGCTGCTGGGGGTCTGGCTGGCCGCCCTGGTGCTCGCCGTCCCGGCCGCGGTCTACCGCCACCTCTGGG
GCGGGCGCGTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGCCTGGAGACCCT
GACTGCCTTCGTCTTGCCTTTTGGGACCGTGCTCGGCTGCTATGGCGTGACGCTGGCGCGGTTGCGAGGA
GCGCGCTGGGGCTCGGGGCGACAAGGCACACGGGTGGGTCGTCTGGTGAGCGCCATCGTGCTGGCCTTTG
GCTTGCTCTGGGCTCCCTACCACGCGGTCAATCTCCTACAGGCGGTGGCCGCGCTCGCTCCGCCGGAAGG
ACCCCTGGCCAGGCTCGGCGGGGCGGGCCAGGCGGCGCGCGCTGGAACTACAGCCTTGGCTTTCTTCAGT
TCCAGCGTCAACCCAGTGCTCTATGTCTTCACTGCGGGGGATTTGCTGCCGCGGGCCGGGCCTCGGTTCC
TTACTCGACTCTTCGAGGGCTCTGGGGAGGCCCGAGGGGGCAGCCGCTCTAGGGAGGGTACCATGGAACT
CCGAACTACTCCTAAGCTGAAAGTAATGGGGCAGGGCAGGGGCAATGGAGACCCTGGAGGCGGAGATGGG
GGCAAGACGGAGAAAGACAGTCAAGAATGGTAG

Translation (360 aa):
MSVCYRPPGNETLLSWKGSRATGTAFLLLAALLGLPGNGFVVWSLAGWRPTAGRPLAATLVLHLALADGA
VLLLTPLFVAFLSQEAWPLGQVGCKAVYYVCALSMYASVLLTGLLSLQRCLAVTRPFLAPRLRSPALARR
LLLGVWLAALVLAVPAAVYRHLWGGRVCQLCHPSPVHAAAHLSLETLTAFVLPFGTVLGCYGVTLARLRG
ARWGSGRQGTRVGRLVSAIVLAFGLLWAPYHAVNLLQAVAALAPPEGPLARLGGAGQAARAGTTALAFFS
SSVNPVLYVFTAGDLLPRAGPRFLTRLFEGSGEARGGSRSREGTMELRTTPKLKVMGQGRGNGDPGGGDG
GKTEKDSQEW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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