NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26860.1 Public Mus musculus 14 Vcl 23 108 98 CCDS HistoryNCBI Gene:22330Re-query CCDS DB by CCDS ID:26860.1Re-query CCDS DB by GeneID:22330See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022369.8 ENSMUSP00000022369.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022369.8Link to Ensembl Protein Viewer:ENSMUSP00000022369.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022369Re-query CCDS DB by Protein ID:ENSMUSP00000022369
Original member Current member NCBI NM_009502.5 NP_033528.3 Accepted alive Link to Nucleotide Sequence:NM_009502.5Link to Protein Sequence:NP_033528.3Re-query CCDS DB by Nucleotide ID:NM_009502Re-query CCDS DB by Protein ID:NP_033528Link to BLAST:NP_033528.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033528.3 1066 Q64727 1066 100% 0 0

Chromosomal Locations for CCDS 26860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20929521 20929688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20967538 20967608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20982574 20982724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20983368 20983476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20985627 20985749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20986958 20987118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20995012 20995102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20995845 20995992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21001131 21001284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21003095 21003270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21007114 21007304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21008861 21009060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21010038 21010166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21014911 21015060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21019280 21019388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21020479 21020781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21022003 21022127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21024106 21024291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21029176 21029379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21029782 21029886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21031587 21031733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3201 nt):
ATGCCGGTGTTTCACACGCGTACGATCGAGAGCATCCTGGAGCCGGTGGCGCAGCAGATCTCGCACCTGG
TGATTATGCACGAGGAGGGCGAGGTGGACGGCAAAGCCATTCCTGACCTCACCGCGCCCGTAGCCGCCGT
GCAGGCGGCCGTCAGCAACCTCGTCCGGGTTGGAAAAGAGACTGTTCAGACCACTGAGGATCAGATTCTG
AAGAGAGATATGCCACCAGCCTTTATTAAGGTTGAAAATGCTTGCACCAAGCTTGTTCAGGCAGCCCAGA
TGCTTCAGTCAGACCCATACTCGGTTCCTGCGCGGGATTACCTCATTGACGGCTCTAGGGGAATCCTTTC
TGGCACATCTGACCTACTGCTTACCTTCGATGAGGCTGAGGTTCGTAAAATTATTAGGGTTTGCAAAGGA
ATTTTGGAATATCTTACAGTGGCAGAGGTAGTGGAAACTATGGAAGACTTGGTCACTTACACAAAGAATC
TTGGGCCAGGAATGACTAAGATGGCCAAAATGATTGATGAGAGACAGCAGGAGTTGACTCACCAGGAACA
CCGTGTGATGTTGGTGAACTCAATGAACACTGTCAAAGAGCTGCTTCCTGTTCTCATTTCAGCTATGAAG
ATTTTTGTTACAACCAAAAACTCAAAAAACCAAGGAATAGAAGAAGCTTTGAAAAATCGAAATTTTACTG
TAGAAAAGATGAGTGCTGAAATTAACGAGATCATTCGTGTGTTACAACTCACTTCCTGGGATGAAGATGC
CTGGGCCAGCAAGGACACTGAAGCCATGAAGAGAGCGCTGGCGTCCATAGACTCCAAATTGAACCAGGCC
AAAGGTTGGCTCCGTGACCCCAATGCCTCCCCAGGGGATGCTGGAGAGCAGGCCATCAGGCAGATCTTAG
ATGAAGCTGGAAAAGTTGGTGAACTTTGTGCAGGCAAGGAACGCAGGGAGATCCTAGGAACCTGCAAAAT
GCTAGGGCAGATGACTGACCAAGTGGCTGACCTCCGAGCCAGAGGACAAGGAGCTTCCCCAGTGGCCATG
CAGAAGGCCCAGCAAGTGTCTCAGGGGCTCGACGTGCTTACCGCCAAAGTGGAGAATGCAGCTCGGAAGC
TGGAAGCCATGACGAACTCAAAGCAGAGCATTGCAAAGAAGATTGATGCTGCCCAGAATTGGCTGGCGGA
TCCAAATGGTGGACCTGAGGGAGAAGAACAGATTCGAGGGGCTTTGGCTGAAGCTCGGAAGATTGCAGAA
TTATGTGATGATCCTAAGGAGAGAGATGACATCCTCCGCTCCCTTGGAGAGATAGCTGCTCTGACCTCTA
AACTAGGAGACTTGCGAAGACAGGGGAAAGGAGACTCGCCAGAGGCTCGAGCCTTGGCTAAACAAGTGGC
GACGGCACTACAGAACCTGCAGACCAAAACCAACAGGGCCGTGGCCAACAGCAGACCTGCCAAAGCAGCT
GTCCACCTCGAGGGCAAGATTGAACAGGCGCAGCGGTGGATTGATAACCCCACAGTAGATGACCGTGGAG
TCGGTCAGGCTGCCATCCGTGGACTTGTGGCTGAGGGGCATCGGCTGGCCAATGTCATGATGGGACCTTA
TCGCCAAGATCTTCTTGCCAAATGTGACCGTGTAGACCAGCTAACAGCTCAGCTGGCTGACCTGGCTGCC
CGAGGGGAGGGGGAGAGTCCTCAGGCGAGAGCACTTGCATCCCAGCTTCAGGACTCCTTAAAGGATCTTA
AAGCCCAGATGCAGGAAGCTATGACTCAAGAGGTATCCGATGTTTTCAGCGATACTACAACTCCTATCAA
GCTGTTGGCAGTAGCCGCCACTGCTCCTCCTGATGCACCCAATAGGGAAGAGGTATTTGATGAAAGGGCA
GCCAATTTTGAAAACCATTCAGGAAGGCTTGGAGCCACAGCAGAGAAGGCGGCTGCTGTTGGTACTGCCA
ATAAATCGACAGTGGAAGGCATTCAGGCATCTGTGAAGACAGCCCGAGAACTCACTCCCCAGGTCATCTC
CGCTGCTCGGATCTTACTGAGGAACCCTGGTAACCAGGCTGCTTATGAACATTTTGAGACCATGAAGAAC
CAGTGGATTGATAATGTTGAAAAAATGACAGGGCTGGTGGACGAGGCTATTGATACCAAGTCTCTGTTGG
ATGCTTCTGAAGAAGCAATTAAAAAAGACCTGGACAAGTGTAAGGTAGCCATGGCCAATATTCAGCCTCA
GATGCTGGTCGCTGGAGCAACCAGTATTGCTCGTCGGGCCAACCGGATTCTGCTGGTTGCTAAGAGGGAG
GTAGAGAACTCTGAGGACCCGAAGTTCCGAGAGGCTGTGAAAGCTGCCTCTGATGAACTGAGCAAAACAA
TCTCCCCCATGGTGATGGATGCCAAGGCTGTGGCTGGAAACATCTCTGACCCTGGCCTGCAAAAGAGCTT
CCTGGACTCAGGATATCGGATCCTGGGAGCTGTGGCCAAGGTCAGAGAAGCCTTCCAACCTCAGGAGCCT
GACTTCCCGCCTCCTCCACCAGACCTTGAACAGCTACGACTAACTGATGAGCTGGCTCCTCCTAAGCCAC
CTCTGCCTGAGGGTGAAGTCCCTCCACCCAGGCCCCCACCACCAGAAGAGAAGGATGAAGAGTTCCCTGA
GCAGAAAGCTGGTGAGGTGATTAACCAGCCAATGATGATGGCCGCCAGGCAGCTCCACGATGAAGCTCGG
AAATGGTCTAGCAAGGGCAATGACATCATTGCAGCAGCCAAGCGCATGGCTCTGCTGATGGCAGAGATGT
CTCGGCTGGTAAGAGGGGGCAGTGGTACCAAGCGGGCACTTATTCAGTGTGCCAAGGATATCGCCAAGGC
CTCTGATGAGGTGACGAGGTTGGCCAAGGAGGTTGCCAAGCAGTGCACAGATAAGCGGATTAGAACCAAT
CTCTTACAGGTATGCGAGCGAATCCCAACTATAAGCACCCAGCTCAAAATCCTATCCACAGTGAAGGCCA
CTATGCTGGGCCGGACCAACATCAGTGATGAGGAGTCTGAGCAGGCCACAGAGATGCTGGTTCATAATGC
CCAGAACCTCATGCAGTCTGTGAAGGAGACTGTGCGAGAGGCTGAAGCTGCTTCAATCAAAATCCGAACA
GATGCTGGCTTTACTCTGCGCTGGGTCAGAAAGACTCCCTGGTACCAGTAG

Translation (1066 aa):
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQIL
KRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKG
ILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMK
IFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQA
KGWLRDPNASPGDAGEQAIRQILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAM
QKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAE
LCDDPKERDDILRSLGEIAALTSKLGDLRRQGKGDSPEARALAKQVATALQNLQTKTNRAVANSRPAKAA
VHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAA
RGEGESPQARALASQLQDSLKDLKAQMQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERA
ANFENHSGRLGATAEKAAAVGTANKSTVEGIQASVKTARELTPQVISAARILLRNPGNQAAYEHFETMKN
QWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKRE
VENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP
DFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEAR
KWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTN
LLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRT
DAGFTLRWVRKTPWYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH