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Report for CCDS26502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26502.1 Public Mus musculus 13 Ecm2 23 108 98 CCDS HistoryNCBI Gene:407800Re-query CCDS DB by CCDS ID:26502.1Re-query CCDS DB by GeneID:407800See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051504.7 ENSMUSP00000060402.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051504.7Link to Ensembl Protein Viewer:ENSMUSP00000060402.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051504Re-query CCDS DB by Protein ID:ENSMUSP00000060402
Original member NCBI NM_001012324.3 NP_001012324.1 Updated not alive Link to Nucleotide Sequence:NM_001012324.3Link to Protein Sequence:NP_001012324.1Re-query CCDS DB by Nucleotide ID:NM_001012324Re-query CCDS DB by Protein ID:NP_001012324
Current member NCBI NM_001012324.4 NP_001012324.1 Accepted alive Link to Nucleotide Sequence:NM_001012324.4Link to Protein Sequence:NP_001012324.1Re-query CCDS DB by Nucleotide ID:NM_001012324Re-query CCDS DB by Protein ID:NP_001012324Link to BLAST:NP_001012324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012324.1 670 Q5FW85 670 100% 0 0

Chromosomal Locations for CCDS 26502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49514823 49515099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49518302 49518490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49520572 49521072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49522776 49522891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49524323 49524458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49527610 49527767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49528874 49529013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49530065 49530391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49531263 49531431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGAAGCTAGCAGTGTTGTTTTGTTTCATTCTGCTTATTGTTCTTCAAACTGATTGTGAACGAGGTACTA
GGAGGCAAAGGAGAAGGATGCATCAGAGAAGACTCAGGAAAAGCTCTTCATTCCACCTCAGAGCCAACAG
GCAGCTTGAAGTTCAGCAAACCACTGCTGCTCCAGATGCTAGACTACCCACTGCCAACTCTGATTACAGT
GTGGAAGAAAACATAGAATCGCTTCTAAGTAATCTTGGAGTAGAATCAAGTTACAGTGTTTTACCAGGAA
AGAAAGGATACTGCTTTGTAAAGGGCATGATCATGTACAACAAAGCTGTCTGGTCTCCTGAGCCCTGCAC
CACCTGCCTCTGCTCAAATGGAAGAGTGCTTTGTGATGAAACCGAGTGCCACCCCAAGGCGTGCCCCTAT
ACCATTAAACCGGAAGGAGAGTGCTGCCCCATCTGCTCTGATGCTGAACAAGAATCCATTAACAAACTTC
ACAAGCAAGTGCCACCTCCTCAGATGGAAATGGACCAAGTAGCCATAAAAGAAGCTCTTCAATCTGAGGA
GGATGAAGAGATAGCTGAAGGACACAAGGAGCACAAGAAAGAGACCTCAGTGCCTACTAAGATCCATGGC
GATGGGGAAAGAACTGAGAGAAAACTGAGGCCGGAGAAAGAAGGGAGGTCAGCACATCAACCACTCTACC
ATGGAAGAAGGGAGGAAGAGGAGAGCAAGGAGGAGACTGAGAGGGAAGGAGAGGAGGAAGAGGAGGAGGA
GGAAGAAGAAGAAGAGGATGCTATAAGAGGAGATGTGTTCAGAATGTCCTCCCGGGTAATTCCTGGAACC
CCAAGAGGCAGGCCACGTCTGCCCAGAAGCTGTTCCCTGTCCTACAGGACTATCAGCTGCGTTCATGCAG
ACTTCACTGAGATCCCACCAATAACAGCACCAGAAGTAACGAACCTGGAGTTGGTTGGGAATTCGATCAT
CTCCATTCCGGATGAAGCATTTAATGGATTACCAAATTTGGAAAGACTTGATCTGAGCAGAAATAATATC
ACTTCTTCGGGCATAGGTCCAAAAGCATTCAAGTCTTTGAAGAAGTTAATGCGTCTGAACATGGATGGAA
ATAATTTGGTACATATTCCTTCAGACTTACCATCTACACTAGAAGAACTTAAAATAAATGACAACAATCT
CCAGGCTATCGATGAGAAAAGTTTATCAGACTTAAATCAACTTGTCACTTTAGAATTGGAAGGAAACAAT
CTCAGTGAAATCAATGTCGACCCTCTAGCTTTCCAATCTTTGGAAAGTCTATCGTATCTACGTCTGGGAA
GAAACAAATTTAGAATCATACCACAAGGTCTTCCTGCTTCTACTGAGGAGTTATACCTAGAAAATAATCA
AATTGAAGAAATAACTGAAATTTGTTTCAATCATACCAGAAAGATAACTATGATCATTCTACGTTACAAT
AAAATAGAAGAAAGTCGGATTGCTCCTTTAGCATGGATAAATCAAGAAAATCTTGAATCTATTGACCTGT
CCTATAACAAGCTCTACCACGTCCCCTCCTACCTACCCAAATCTCTTCTGCACCTTGTCCTAATTGGGAA
CCAAATCGATCGGATCCCTGGCTATGTGTTTGGCCACATGCAACCAGGCCTGGAGTACTTGTACCTGTCA
TTTAACAGACTTTCTGATGATGGTGTGGACCTAGTCTCGTTCTATGGAGCATATCATTCTCTGAGAGAAT
TATTTCTGGATCACAATGACTTCAAATCTATACCACCTGGAATACAAGACATGAAAGCACTGCATTTTCT
GAGGCTGAACAACAATAAGATTCGGAATATTCATCCTGAGCAAATCTGCAATGCTGAAGAGGATGAGGAC
TCAGCTCTCGAGCATCTTCATCTTGAAAACAATTATATTAGAACTAGAGAGATATCATCCTATGCATTTT
CATGCATAAGACTGTATTCAAGTATTGTTCTTAAACCACAACACATCAAGTGA

Translation (670 aa):
MKLAVLFCFILLIVLQTDCERGTRRQRRRMHQRRLRKSSSFHLRANRQLEVQQTTAAPDARLPTANSDYS
VEENIESLLSNLGVESSYSVLPGKKGYCFVKGMIMYNKAVWSPEPCTTCLCSNGRVLCDETECHPKACPY
TIKPEGECCPICSDAEQESINKLHKQVPPPQMEMDQVAIKEALQSEEDEEIAEGHKEHKKETSVPTKIHG
DGERTERKLRPEKEGRSAHQPLYHGRREEEESKEETEREGEEEEEEEEEEEEDAIRGDVFRMSSRVIPGT
PRGRPRLPRSCSLSYRTISCVHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLDLSRNNI
TSSGIGPKAFKSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKSLSDLNQLVTLELEGNN
LSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLENNQIEEITEICFNHTRKITMIILRYN
KIEESRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLVLIGNQIDRIPGYVFGHMQPGLEYLYLS
FNRLSDDGVDLVSFYGAYHSLRELFLDHNDFKSIPPGIQDMKALHFLRLNNNKIRNIHPEQICNAEEDED
SALEHLHLENNYIRTREISSYAFSCIRLYSSIVLKPQHIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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