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Report for CCDS26499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26499.1 Public Mus musculus 13 Fgd3 23 108 98 CCDS HistoryNCBI Gene:30938Re-query CCDS DB by CCDS ID:26499.1Re-query CCDS DB by GeneID:30938See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048716.10 ENSMUSP00000048692.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048716.10Link to Ensembl Protein Viewer:ENSMUSP00000048692.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048716Re-query CCDS DB by Protein ID:ENSMUSP00000048692
Original member Current member EBI ENSMUST00000110087.8 ENSMUSP00000105714.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110087.8Link to Ensembl Protein Viewer:ENSMUSP00000105714.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110087Re-query CCDS DB by Protein ID:ENSMUSP00000105714
Original member Current member NCBI NM_015759.2 NP_056574.2 Accepted alive Link to Nucleotide Sequence:NM_015759.2Link to Protein Sequence:NP_056574.2Re-query CCDS DB by Nucleotide ID:NM_015759Re-query CCDS DB by Protein ID:NP_056574Link to BLAST:NP_056574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056574.2 733 O88842-1 733 99.7271% 0 2

Chromosomal Locations for CCDS 26499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49263784 49264035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49264639 49264779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49266591 49266731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49268233 49268355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49273710 49273772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49274915 49275022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49275610 49275640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49277537 49277616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49278514 49278606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49280052 49280198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49281217 49281275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49281817 49281955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49285694 49285850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49287286 49287422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49289564 49289653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49296331 49296771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGAATTGGGTAGGAGCCCCTCGACACCCCAAGAAGAAGCCATTTCCCCTCTTGGAGTACTTGGCACTG
GGCCCAGCAGCTCCCCACTAGGGAAGCTTCAAGCCCTTCCCATCGGTCCAGGTGCCCACCGAGGGGCTCA
TAGCAGCTCAGCCCCAGCAGGGGACAGCTCCACGCGGGAGCCAAGTGGTGCCATGAAGATCCCCAACAGA
GACAGTGGAATTGACAGCCCATCCTCCAGTGTGGCCAGTGAGAACTTCCCCTGTGAGGAGAGCAGTGAGG
GCTCTCCAAGCCCTGCCATCCTGGGGCTACCCTCTGAGACGGCTTCGGACAGCCGGGTCCCACAGGACAA
CCCCCAGGAGGAAGAAGATAGTGGCATGGGTGAGGAGCCTGACCCCAAGGTCACCCTGTTTAGGCCTCAG
GAGGATGTCAGCTTGACTCAGTGCTCTGACCCACAGAAGCTGCTTCATATTGCCCAGGAGCTCCTGCACA
CGGAGGAAGCCTACGTGAAGCGGCTGCACCTGCTGGACCAGGTTTTCTGTACTAAGCTGACAGAAGCAGG
GATCCCTCTGGAAGTCACCACCGGCATCTTCTCGAACATCTCTTCCATCTACCGTTTCCATGGGCAGTTC
CTCCTGCCCGAGCTGCAGAAGAGGATCACAGAGGAGTGGGATACAAACCCTCGCCTCGGAGACATCCTGC
AGAAACTGGCTCCATTCCTGAAGATGTATGGCGAGTACGTCAAGAACTTTGACAGAGCGATGGGGCTGGT
GAGCACTTGGACCCAGCGTTCTCCGCAGTTTAAGGATGTCATCCACACCATCCAGAAGCAGGAGGTGTGT
GGGAACTTGACACTGCAGCATCACATGCTGGAGCCTGTGCAGAGGGTCCCCCGCTATGAGCTGCTGCTCA
AGGACTACCTAAAGAGGCTCCCCAGGGATGCCCCAGACCGGAAGGATGCAGAGAGGTCCCTGGAGCTCAT
CTCCACAGCTGCTGACCACTCCAATGCTGCCATTAGGAAGATGGAGAAAATGCACAAGCTCTTAGAGGTG
TATGAGCAGCTGGGTGGGGAAGAGGACATCGTTAACCCAGCCAATGAGCTGATCAAGGAGGGCAGCATCC
AGAAGTTATCAGCCAAGAATGGCACCACTCAGGACCGACACCTCTTCCTGTTCAACAATGTGATGCTCTA
CTGTGTACCCAAACTGAGGCTCATGGGCCAGAAGCTAAGTGTACGGGAAAAAATGGACATCTCTGATCTC
CAGGTACAAGATATTGTGAAACCAAACGCAGCCTGCACGTTCATCATAACAGGAAGAAAAAGGTCCCTGG
AGCTTCAGACTCGGACAGAAGAAGAGAAGAAAGAATGGATTCAGGTCATTCAGGCCACTGTGGAGAAGCA
CAAACAGAAGAGTGAGACCTTCAGGGCCTTTGGCGGTGCCTGTAGCCAGGATGAGGAGCCCACCCTGTCT
CCAGACCAGCCCGTCATGAGTACCAGCTCTGTGGAACCTGCAGGGGTAGCTGACAGCAATGGGGGTACTC
CCGGGATCGAGTCCAGAAAGTCGTCCTCTAAAACAAGACGCGACAAAGAGAAGCCCGGGTGTAAGAGCTG
TGGTGAGACCTTCAACTCCATCACTAAGAGGAGGTATCGCTGCAAGCTGTGTGGAGAGGTCATCTGTAGG
AAGTGCTCAGAGTTCAAGGCAGAGAACAGTAAGCAGAGCCGCGTCTGCCGAGAGTGTTTCCTGGAAGAGC
CCCTGGTCCCTCCAAGCCCCAGCTCTGAGACTCCCACTGAGCTCAAACAGAATGCAGAGAAGCCTCCCTC
TGTAGATCCTCGGCCCAGCCTGCTCTGCGGTACCCTGAATCTGTCAGACGATGGTACGACCTGGAATGAA
GTGTGGGCAGCCATCCCTGAATCAGATCCTCAGGTGCTAGACCTGCTGGCAGGCAGCCAGGCTGGCAGAC
TGCTGTATAGCATCCCACTCTCTGGCTGTAATATAACGATGCCTGACCCTGAGGAGGGGCTGGAGGCAGG
ATGTGCCTGGAAGCTACATCAGGGCTCACAGACCTGGTGGCTGAGCGCCCCCTCCACAAAGCTGCAGCAA
TGCTGGCTGAAAGCCCTGGGCACTGCCGTACATGGGGACACAGCCGGGGACAGACCAGGGGCCTCCCAGC
CCCAGGCCCCAGCAGGCACGGACACTCCATGA

Translation (733 aa):
MELGRSPSTPQEEAISPLGVLGTGPSSSPLGKLQALPIGPGAHRGAHSSSAPAGDSSTREPSGAMKIPNR
DSGIDSPSSSVASENFPCEESSEGSPSPAILGLPSETASDSRVPQDNPQEEEDSGMGEEPDPKVTLFRPQ
EDVSLTQCSDPQKLLHIAQELLHTEEAYVKRLHLLDQVFCTKLTEAGIPLEVTTGIFSNISSIYRFHGQF
LLPELQKRITEEWDTNPRLGDILQKLAPFLKMYGEYVKNFDRAMGLVSTWTQRSPQFKDVIHTIQKQEVC
GNLTLQHHMLEPVQRVPRYELLLKDYLKRLPRDAPDRKDAERSLELISTAADHSNAAIRKMEKMHKLLEV
YEQLGGEEDIVNPANELIKEGSIQKLSAKNGTTQDRHLFLFNNVMLYCVPKLRLMGQKLSVREKMDISDL
QVQDIVKPNAACTFIITGRKRSLELQTRTEEEKKEWIQVIQATVEKHKQKSETFRAFGGACSQDEEPTLS
PDQPVMSTSSVEPAGVADSNGGTPGIESRKSSSKTRRDKEKPGCKSCGETFNSITKRRYRCKLCGEVICR
KCSEFKAENSKQSRVCRECFLEEPLVPPSPSSETPTELKQNAEKPPSVDPRPSLLCGTLNLSDDGTTWNE
VWAAIPESDPQVLDLLAGSQAGRLLYSIPLSGCNITMPDPEEGLEAGCAWKLHQGSQTWWLSAPSTKLQQ
CWLKALGTAVHGDTAGDRPGASQPQAPAGTDTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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