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Report for CCDS26343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26343.1 Public Mus musculus 13 H2bc9 23 108 98 CCDS HistoryNCBI Gene:319182Re-query CCDS DB by CCDS ID:26343.1Re-query CCDS DB by GeneID:319182See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224359.1 ENSMUSP00000153277.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224359.1Link to Ensembl Protein Viewer:ENSMUSP00000153277.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224359Re-query CCDS DB by Protein ID:ENSMUSP00000153277
Original member Current member NCBI NM_178197.2 NP_835504.1 Accepted alive Link to Nucleotide Sequence:NM_178197.2Link to Protein Sequence:NP_835504.1Re-query CCDS DB by Nucleotide ID:NM_178197Re-query CCDS DB by Protein ID:NP_835504Link to BLAST:NP_835504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835504.1 126 Q64478 126 100% 0 0

Chromosomal Locations for CCDS 26343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23542972 23543352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCTGAGCCCGCCAAGTCCGCTCCTGCCCCGAAGAAGGGCTCCAAGAAGGCCCTGACCAAGGCCCAGA
AGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCGGTGTACGTGTACAAGGTGCTGAA
GCAAGTGCACCCCGACACCGGCATCTCCTCCAAAGCCATGGGCATCATGAACTCGTTCGTGAACGACATC
TTCGAGCGCATCGCGGGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGG
AGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAA
GGCTGTCACCAAGTACACCAGCTCCAAGTGA

Translation (126 aa):
MPEPAKSAPAPKKGSKKALTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDI
FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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