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Report for CCDS25939.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25939.2 Public Mus musculus 12 Prpf39 23 108 98 CCDS HistoryNCBI Gene:328110Re-query CCDS DB by CCDS ID:25939.2Re-query CCDS DB by GeneID:328110See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25939.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120580.7 ENSMUSP00000112953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120580.7Link to Ensembl Protein Viewer:ENSMUSP00000112953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120580Re-query CCDS DB by Protein ID:ENSMUSP00000112953
Original member Current member NCBI NM_177806.3 NP_808474.2 Accepted alive Link to Nucleotide Sequence:NM_177806.3Link to Protein Sequence:NP_808474.2Re-query CCDS DB by Nucleotide ID:NM_177806Re-query CCDS DB by Protein ID:NP_808474Link to BLAST:NP_808474.2

Chromosomal Locations for CCDS 25939.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 65042490 65042807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65043232 65043357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65044006 65044124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65048113 65048280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65053286 65053451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65053971 65054078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65055156 65055320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65055638 65055764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65056251 65056519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65057729 65057913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65059871 65059945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65061151 65061265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65061424 65061480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGCAAAACTCCCACATGGAAGAGTACAGGAACTCTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAG
CA
GTAGTAGAGCATCCAGATTTTAGTACTGAGATTATGAACGTTACGGAGATGGAGCAGTCGCCTGATGC
C
TCTCCCAGCGCACATGCATCTACAGAAGAAAATGAAATGGCAAATGCTGTGAACCTTCCAGTGACAGAA
GCA
GAAGGAGACTTCCCTCCAGAGTTTGAAAAATTTTGGAAAACAGTAGAAATGAATCCTCAGGATTTTA
CA
GGCTGGGTATATTTGCTTCAGTATGTAGAACAGGAGAATCATTTGATGGCTGCCAGGAAAGCATTTGA
C
AAATTTTTCGTACACTACCCGTATTGCTATGGTTACTGGAAAAAGTATGCAGACCTTGAAAAGCGACAT
GAC
AACATTAAACAATCAGATGAGGTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTTGATCTTT
GG
ATACATTATATAAACTTCTTGAAAGAAACATTGGACCCTGGTGATCAGGAGACAAACACTACAATAAG
A
GGAACTTTTGAGCATGCTGTTCTAGCTGCAGGAACAGATTTTCGATCTGACAAATTATGGGAAATGTAT
ATA
AACTGGGAGAATGAACAGGGAAATCTGCGAGAAGTTACAGCTGTATACGATCGTATTCTTGGTATTC
CA
ACACAGCTGTACAGTCATCATTTTCAGAGATTTAAAGAACATGTACAAAATAACTTGCCTAGAGATCT
T
TTAACTGGTGAACAGTTTATTCAGCTGAGAAGGGAATTAGCTTCTGTAAATGGACACAGTGGTGATGAC
GGC
CCTCCTGGTGATGACCTTCCATCAGGAATTGAAGACATAACTGATCCAGCAAAGCTAATTACTGAAA
TA
GAAAATATGAGACACAGAATCATTGAAATTCATCAAGAAATGTTTAATTATAATGAGCATGAAGTTAG
T
AAGAGGTGGACATTTGAAGAAGGTATTAAAAGACCTTATTTTCATGTGAAACCATTGGAAAAGGCTCAG
CTA
AAAAACTGGAAAGAATACTTAGAATTCGAAATTGAAAATGGGACTCATGAAAGAGTTGTGGTTCTCT
TT
GAAAGATGTGTCATATCTTGTGCCCTCTATGAGGAGTTTTGGATTAAGTATGCCAAGTACATGGAAAA
C
CATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCATG
GCA
CACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGGAATATTAATGAAGCCAGGATTATCTTGAGAA
CG
TTTGAAGAATGTGTTCTAGGATTGGCAATGGTTCGATTGCGAAGAGTAAGTTTAGAACGACGGCATGG
A
AATATGGAAGAAGCCGAACATTTGCTTCAGGATGCTATAAAGAATGCCAAATCAAATAATGAGTCATCA
TTT
TATGCTATCAAACTAGCCCGACATCTTTTCAAAATACAGAAAAATCTTCCAAAATCAAGAAAGGTAC
TT
TTGGAAGCAATCGAAAAAGATAAGGAGAACACAAAGTTATACCTCAATTTACTTGAAATGGAATACAG
T
TGTGACCTCAAGCAAAATGAAGAAAATATCCTCAATTGCTTTGACAAAGCCATACATGGTTCATTGCCT
ATT
AAAATGAGAATTACATTTTCTCAAAGAAAAGTGGAATTCCTTGAAGATTTTGGTTCAGATGTTAATA
A
G
CTTCTGAATGCATATGATGAACACCAAACACTTCTAAAAGAACAGGATACTTTAAAAAGGAAAGCTGA
A
AATGGCTCAGAAGAACCAGAAGAAAAGAAAGCACACACAGAAGATTTGTCATCAGCACAGATCATTGAT
GGG
GATTTACAGGCAAATCAAGCTGCATATAATTACAGTGCCTGGTACCAGTACAATTATCAGAATCCTT
GG
AATTATGGACAGTATTATCCTCCACCTCCAACTTGA


Translation (665 aa):
MQNSHMEEYRNSDNGSTGNSSEVAVVEHPDFSTEIMNVTEMEQSPDASPSAHASTEENEMANAVNLPVTE
A
EGDFPPEFEKFWKTVEMNPQDFTGWVYLLQYVEQE
NHLMAARKAFDKFFVHYPYCYGYWKKYADLEKRH
D
NIKQSDE
VYRRGLQAIPLSVDLWIHYINFLKETLDPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMY
I
NWENEQGNLREVTAVYDRILGIPTQLYSHHFQ
RFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDD
G
PPGDDLPSGIEDITDPAK
LITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQ
L
KNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIK
YAKYMENHSIEGVRHVFSRACTVHLPKKPM
A
HMLWAAFEEQQ
GNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNESS
F
YAIKLARHLFKIQKNLPKSRKVLLEAIEKDK
ENTKLYLNLLEMEYSCDLKQNEENILNCFDKAIHGSLP
I
KMRITFSQRKVEFLEDFGSDVN
KLLNAYDEHQTLLKEQDTLKRKAENGSEEPEEKKAHTEDLSSAQIID
G
DLQANQAAYNYSAWYQ
YNYQNPWNYGQYYPPPPT



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser