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Report for CCDS25863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25863.1 Public Mus musculus 12 Slc26a3 23 108 98 CCDS HistoryNCBI Gene:13487Re-query CCDS DB by CCDS ID:25863.1Re-query CCDS DB by GeneID:13487See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001254.5 ENSMUSP00000001254.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001254.5Link to Ensembl Protein Viewer:ENSMUSP00000001254.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001254Re-query CCDS DB by Protein ID:ENSMUSP00000001254
Original member Current member NCBI NM_021353.3 NP_067328.1 Accepted alive Link to Nucleotide Sequence:NM_021353.3Link to Protein Sequence:NP_067328.1Re-query CCDS DB by Nucleotide ID:NM_021353Re-query CCDS DB by Protein ID:NP_067328Link to BLAST:NP_067328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067328.1 757 Q9WVC8 757 100% 0 0

Chromosomal Locations for CCDS 25863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31447099 31447229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31447730 31447869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31448731 31448841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31449078 31449244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31450815 31450979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31452496 31452648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31453865 31453947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31456998 31457145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31457241 31457354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31457460 31457537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31461708 31461803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31463467 31463573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31464676 31464745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31464837 31464929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31465759 31465854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31466397 31466630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31468521 31468575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31470840 31470982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31471088 31471153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31473472 31473495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGATCGAAGCCATAGGGAATCAGTATGTGGTGGCCAGACCGGTGTACTCCACAAAGACTTTTGGAGAGG
AGTTTAAGAAGACGCACAGACATCACAAGACATTCCTGGACCATCTCAAAGGGTGTTGTAGCTGCTCCTC
ACAGAAGGCCAAGAAAATCGCCCTGTCTTTGTTCCCCATAGCATCTTGGTTGCCAGCCTACAAGATAAAG
GAATGGCTTCTCAGTGACATCGTCTCTGGCATCAGCACCGGGCTGGTGGCTGTACTGCAAGGTTTAGCAT
TTGCTCTGCTGGTCAACATCCCTCCAGCCTACGGGTTGTACGCAGCCTTTTTCCCAGTCATAACCTACTT
TTTCTTGGGCACATCTAGACACATATCTGTGGGTCCATTTCCAGTTCTGAGTATGATGGTGGGAGTTGTC
GTTACAAGAGTGGTCTCGGACCCCAATGCTTCTTCAGAGTTGTCCTCAAGCTCCACAGAAAATGACTCGT
TCATAGAGGAGAAAGTAATGGTGGCTGCATCAGTAACTGTTCTTTCTGGAATCATTCAGTTGCTCCTGGG
GGTTCTGCAGGTCGGCTTTGTGGTGATATACCTATCCGAGTCCCTAATCAGTGGCTTCACCACGGCTGCT
GCCATTCACGTTCTGGTTTCTCAACTGAAATTCATGCTACAGCTGCCAGTCCCAGCATACAGCGACCCAT
TCTCTATATTCAAAGTCCTGGAGTCGGTCTTCACACAAATTCAGAAGACGAACATCGCAGACCTTGTGAC
ATCTGTGATTATTCTAGTGGTCGTGTTTGTCTTTAAAGAAATCAATCAGCGTTACAGAAGCAAACTTCCG
GTGCCCATCCCCATCGAACTCATCATGACTGTAATTGCCACAGGTGTGTCCTATGGCTGTAACTTTGAAG
ACAGGTTTGGCGTGGCCGTGGTTGGGAACATGAGTCTTGGATTTCAACCCCCTATTACACCCAGCGTGGA
AGTTTTCCAAGACACCATAGGAGACAGCTTCGGCATCGCGATCGTCGGCTTTGCCGTGGCCTTTTCCGTT
GCCAGCGTGTACTCCCTCAAATACGATTATCCGATTGATGGCAATCAGGAGTTAATTGCCTTGGGAGTGA
GCAACATATTCACTGGAGCATTCAAAGGATTTGCAGGGAGCACAGCCCTTTCCAGATCAGGGGTTCAGGA
GAGCACGGGAGGCAAAACACAGGTTGCGGGGCTTCTCTCAGCTGTCATCGTGTTGATCGTCATAGTTGCC
ATTGGGTTTCTTCTGCAGCCGCTACAAAAGTCTGTCCTGGCAGCGCTAGCACTCGGAAACTTAAAGGGAA
TGCTGATGCAGTTTGCTGAAATAGGCAGATTGTGGAAAAAGGATAAATATGATTGTTTAATTTGGATCAT
GACCTTCATCTTCGCCATTGTCCTTGGACTCGGATTAGGCCTGGCGGCAAGTGTAGCATTTCAACTCCTA
ACTATTGTGTTCAGGACCCAATTTCCAAAGTGCAGCACATTGGCTAATGTTGGAAGGAGCAACATCTACA
AGAATAAAAAGAATTATGCCGAAGTGTATGAGCCTGAAGGAGTGAAAATTTTTAGATGTCCATCTCCAAT
CTACTTCGCAAACATTGGTTTCTTTAAGCAGAAACTTATTGATGCTGTTGGCTTTAGCCCACTTCGAATT
CTACGGAAGCGCAACAAAGCTTTGAAGAAAATCCGAAAACTGCAGAAACGAGGTCTGATACAGATGACAC
CTAAAGGGTTTATATGCACCTCTGACGGTTTCAAAGACTCCGACGAAGAATTGGACAACAACCAGATAGA
AGAACTTGATCAGCCGATCAATACCACAGATCTGCCCTTTGACATAGACTGGAACGGGGATCTTCCCCTC
AACATCACCATCCCCAAAATCAGCCTCCACAGCCTCATCCTCGATTTTTCAGCAGTGTCTTTCCTTGACG
TCTCCTCAATGAGGGGCCTCAGAACGATTTTACAAGAATTTATTAGGATCAAGGTGGACGTATATATTGT
GGGAACCGATGATGATTTCATTGACAAACTTGCTCGGTGTGAATTCTTCGATGATGAAGTCACAGACTCA
ATATTTTTCTTAACAATCCATGATGCTATTTTGCATATTTTGATGAAGAAGGACTACAGCACTTCAAAGT
TTAATTCCAGCCAGGAAAAAGAAAGGAAATTTGACTTTACCATAAATACAAATGGAGGACTACGTAATCG
GGAATGTCAGGTACCAGTTGAAACGAAATTCTAA

Translation (757 aa):
MIEAIGNQYVVARPVYSTKTFGEEFKKTHRHHKTFLDHLKGCCSCSSQKAKKIALSLFPIASWLPAYKIK
EWLLSDIVSGISTGLVAVLQGLAFALLVNIPPAYGLYAAFFPVITYFFLGTSRHISVGPFPVLSMMVGVV
VTRVVSDPNASSELSSSSTENDSFIEEKVMVAASVTVLSGIIQLLLGVLQVGFVVIYLSESLISGFTTAA
AIHVLVSQLKFMLQLPVPAYSDPFSIFKVLESVFTQIQKTNIADLVTSVIILVVVFVFKEINQRYRSKLP
VPIPIELIMTVIATGVSYGCNFEDRFGVAVVGNMSLGFQPPITPSVEVFQDTIGDSFGIAIVGFAVAFSV
ASVYSLKYDYPIDGNQELIALGVSNIFTGAFKGFAGSTALSRSGVQESTGGKTQVAGLLSAVIVLIVIVA
IGFLLQPLQKSVLAALALGNLKGMLMQFAEIGRLWKKDKYDCLIWIMTFIFAIVLGLGLGLAASVAFQLL
TIVFRTQFPKCSTLANVGRSNIYKNKKNYAEVYEPEGVKIFRCPSPIYFANIGFFKQKLIDAVGFSPLRI
LRKRNKALKKIRKLQKRGLIQMTPKGFICTSDGFKDSDEELDNNQIEELDQPINTTDLPFDIDWNGDLPL
NITIPKISLHSLILDFSAVSFLDVSSMRGLRTILQEFIRIKVDVYIVGTDDDFIDKLARCEFFDDEVTDS
IFFLTIHDAILHILMKKDYSTSKFNSSQEKERKFDFTINTNGGLRNRECQVPVETKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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