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Report for CCDS25858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25858.1 Public Mus musculus 12 Sntg2 23 108 98 CCDS HistoryNCBI Gene:268534Re-query CCDS DB by CCDS ID:25858.1Re-query CCDS DB by GeneID:268534See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021004.13 ENSMUSP00000021004.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021004.13Link to Ensembl Protein Viewer:ENSMUSP00000021004.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021004Re-query CCDS DB by Protein ID:ENSMUSP00000021004
Original member Current member NCBI NM_172951.3 NP_766539.2 Accepted alive Link to Nucleotide Sequence:NM_172951.3Link to Protein Sequence:NP_766539.2Re-query CCDS DB by Nucleotide ID:NM_172951Re-query CCDS DB by Protein ID:NP_766539Link to BLAST:NP_766539.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766539.2 539 Q925E0 539 100% 0 0

Chromosomal Locations for CCDS 25858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30175128 30175259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30195538 30195648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30201275 30201367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30226768 30226974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30229576 30229647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30236589 30236705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30243304 30243342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30245118 30245247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30257966 30258093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30267031 30267122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30276662 30276749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30288126 30288167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30288272 30288315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30307172 30307229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30307327 30307383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30312536 30312673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30373158 30373229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGAGCGCCGAGGGATCGCAGTCCCTGGCCGCCCCCCGCGGGCGTCCTAGTCACCTACTGGTGCCCGCGC
GG
ACCAAAACAGCTCTGGCCTTGTTGTATGACGAGGGGTTGGAAAATGCCTATGACGTCCGCCTGAAGCT
G
ACAAAAGAGGTGCTGACTATTCAAAAGCAAGATGTCGTCTGCATCGGGGGAGCTCCTCCTGGTGCTAAT
CAC
AGAACTGTTACACTTCGCAGACAACCTGTGGGTGGCCTGGGCCTAAGTATCAAGGGAGGAGCAGAGC
AT
GGGGTCCCCGTCGTCATATCTAAAATATTCAAAGACCAAGCAGCTGACCAGACAGAGATGTTGTTCAT
A
GGAGATGCTGTACTACAGGTTAATGGCATTAATGTAGAAAACGCAACCCATGAAGAAGTGGTGCATCTT
CTG
AGAAACGCTGGCGATGACGTCACCATCACTGTTGAGTATCTCAGGGAAGCACCCTCATTTCTGAAGC
TG
CCATTAGGGTCCCCAGGGCCATCCAGTGACCATAGCAGCAGGGCCTCATCGCCTCTCTTTGACAGTGG
C
CTGCACCTGAATGGACACTGCAGCCACACAGCTCCATCATCACCTTCCTCACCCATAGCTAATGAACCA
AAG
TATGAGAAGCGTTGGCTAGACACCTTGTCAGTCCCTCTGTCTATGGCTCGGATCTCCAGATACAAAG
CT
GGAACAGAAAAGCTCAGGTCCAGTGCATTGGAGGTGCTGGCCCTGGATGGAGCCAGCACAGGAGTCCT
T
CAATTCTCCACTGCCCAGGACTGTGCTGACTGGTTGCGTTCAATCTCAACCAACATCAGTGACCTGACG
CTT
CAACATATGAAAATGGCAAATAAATGCTGTTCTCCCTGTGACCAGGTGGTGCACATGGGATGGGTAA
AT
GAGAGGCTCCAAGGAGCTGACAACTCTCAGAACTTCAGACCCAAGTTCTTGGCCCTGAGGGGTTCATC
A
TTCTACATTTTTGGCGCTCCTCCGGTAAGCACACTGGACTGGGGACGAGCAGAACGTGCCTATAACCTC
TGT
GAGGTGCTGTTTAAAGTTCACAAGTTCTGGCTTTCAGATAACTATTGGCTGCAGGCAAACCTGTATC
TT
GGTCTCCAAGATTTTGACTGTGAAGACCCCAGGTCATACTGCTTCAGCGTCCTGGCCAACCATGGGAA
G
AGCCACATCTTCAGTGTAGAGCTGGGCAGTGAGCTGGCCGTGTGGGAGAAGGCATTCCAAAGAGCAACT
TTC
ATGGAAGTTCAGAGAACCGGGTCCAAAACATATCTGTGCAGCTGGCAAGGGGAGACGCTGTGCTTCA
CG
GTGGATTTTGCTCTGGGATTCACCTGCTTTGACGGTAAGACAAAGAACGTACTCTGGAGATTCAAGTT
C
TCTCAGCTTAAGGGATCCTCAGATGATGGGAAGACTCGAGTAAAGCTGCTGTTTCAGAATCTGGACACC
AAG
CAGATTGAAACGAAGGAGCTGGAGTTCCAGGATTTGACGGCGGTCCTCCACTGCATCCACTCCTTCA
TT
GCCGCCAAGGTGGCCTCCCTGGACCCCGTGTTCATGGATAGCCAGAGTATGGCAAGAAGATACCTGTG
C
AGCAGCTAA


Translation (539 aa):
MSAEGSQSLAAPRGRPSHLLVPARTKTALALLYDEGLENAYDVRLKLTKEVLTIQKQDVVCIGGAPPGAN
H
RTVTLRRQPVGGLGLSIK
GGAEHGVPVVISKIFKDQAADQTEMLFIGDAVLQVNGINVENATHEEVVHL
L
RNAGDDVTITVEYLREAPSFLKLPL
GSPGPSSDHSSRASSPLFDSGLHLNGHCSHTAPSSPSSPIANEP
K
YEKRWLDTLSVPLSMARISRYKAGTEKL
RSSALEVLALDGASTGVLQFSTAQDCADWLRSISTNISDLT
L
QH
MKMANKCCSPCDQVVHMGWVNERLQGADNSQNFRPKFLALRGSSFYIFGAPPVSTLDWGRAERAYNL
C
EVLFKVHK
FWLSDNYWLQANLYLGLQDFDCEDPRSYCFSVLANHGKSHIFSVELGSELAVWEKAFQRAT
F
MEVQRTG
SKTYLCSWQGETLCFTVDFALGFTCFDGKTKNVLWRFKFSQLKGSSDDGKTRVKLLFQNLDT
K
QIETK
ELEFQDLTAVLHCIHSFIAAKVASLDPVFMDSQSMARRYLCSS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser