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Report for CCDS25738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25738.1 Public Mus musculus 11 Slc25a10 23 108 98 CCDS HistoryNCBI Gene:27376Re-query CCDS DB by CCDS ID:25738.1Re-query CCDS DB by GeneID:27376See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026899.3 ENSMUSP00000026899.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026899.3Link to Ensembl Protein Viewer:ENSMUSP00000026899.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026899Re-query CCDS DB by Protein ID:ENSMUSP00000026899
Original member Current member NCBI NM_013770.2 NP_038798.2 Accepted alive Link to Nucleotide Sequence:NM_013770.2Link to Protein Sequence:NP_038798.2Re-query CCDS DB by Nucleotide ID:NM_013770Re-query CCDS DB by Protein ID:NP_038798Link to BLAST:NP_038798.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038798.2 287 Q9QZD8 287 100% 0 0

Chromosomal Locations for CCDS 25738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120491987 120492076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120494477 120494596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120494960 120495074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120495160 120495208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120495446 120495487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120496423 120496466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120496636 120496706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120497014 120497106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120497384 120497461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120497920 120497976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120498071 120498175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCCGAGGCACGCGCATCTCGCTGGTACTTTGGGGGGCTGGCTTCCTGCGGAGCCGCTTGCTGCACGC
ACCCGCTGGACCTGCTCAAGGTGCATCTACAGACCCAACAGGAGGTGAAGCTGCGCATGACTGGAATGGC
ACTGCAGGTGGTGCGAACCGATGGCTTCCTGGCGCTCTACAACGGCCTGAGTGCCTCGCTGTGCAGGCAG
ATGACCTACTCTCTGACTCGGTTCGCAATCTACGAGACCATGCGGGACTACATGACCAAGGACTCCCAGG
GGCCTCTCCCCTTCTACAACAAGGTGTTGCTGGGCGGCATCAGTGGTTTAACTGGAGGCTTCGTGGGGAC
CCCAGCAGATTTGGTCAATGTCAGGATGCAGAACGACATGAAGCTGCCCCCGAGCCAACGACGCAACTAC
TCTCATGCCCTGGATGGTCTGTACCGTGTAGCCCGTGAAGAAAGCCTGAGGAAGCTCTTCTCTGGAGCAA
CTATGGCGTCCAGCCGTGGGGCCCTCGTCACTGTGGGCCAGCTGTCCTGCTATGACCAGGCCAAGCAACT
GGTCCTCAGCACTGGGTACCTGAGTGACAACATATTCACCCACTTTGTCTCCAGTTTCATTGCCGGCGGA
TGTGCCACGTTTCTGTGCCAGCCCCTCGATGTGCTGAAGACTCGCCTGATGAACTCCAAGGGCGAGTACC
AGGGTGTTTTCCACTGTGCCATGGAGACAGCAAAGCTTGGACCCCAGGCCTTTTTCAAGGGTCTCTTTCC
CGCGGGCATCCGTCTCATCCCCCACACTGTGCTCACTTTCATGTTCCTGGAGCAGCTTCGGAAGCACTTT
GGCATCAAAGTGCCAACCACCTGA

Translation (287 aa):
MAEARASRWYFGGLASCGAACCTHPLDLLKVHLQTQQEVKLRMTGMALQVVRTDGFLALYNGLSASLCRQ
MTYSLTRFAIYETMRDYMTKDSQGPLPFYNKVLLGGISGLTGGFVGTPADLVNVRMQNDMKLPPSQRRNY
SHALDGLYRVAREESLRKLFSGATMASSRGALVTVGQLSCYDQAKQLVLSTGYLSDNIFTHFVSSFIAGG
CATFLCQPLDVLKTRLMNSKGEYQGVFHCAMETAKLGPQAFFKGLFPAGIRLIPHTVLTFMFLEQLRKHF
GIKVPTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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