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Report for CCDS25737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25737.1 Public Mus musculus 11 Mrpl12 21 106 86 CCDS HistoryNCBI Gene:56282Re-query CCDS DB by CCDS ID:25737.1Re-query CCDS DB by GeneID:56282See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000043627 ENSMUSP00000044417 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043627Link to Ensembl Protein Viewer:ENSMUSP00000044417Re-query CCDS DB by Nucleotide ID:ENSMUST00000043627Re-query CCDS DB by Protein ID:ENSMUSP00000044417
Original member Current member EBI,WTSI OTTMUST00000009671 OTTMUSP00000004660 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000009671Link to Vega Protein Viewer:OTTMUSP00000004660Re-query CCDS DB by Nucleotide ID:OTTMUST00000009671Re-query CCDS DB by Protein ID:OTTMUSP00000004660
Original member NCBI NM_027204.2 NP_081480.2 Updated not alive Link to Nucleotide Sequence:NM_027204.2Link to Protein Sequence:NP_081480.2Re-query CCDS DB by Nucleotide ID:NM_027204Re-query CCDS DB by Protein ID:NP_081480
Current member NCBI NM_027204.3 NP_081480.2 Accepted alive Link to Nucleotide Sequence:NM_027204.3Link to Protein Sequence:NP_081480.2Re-query CCDS DB by Nucleotide ID:NM_027204Re-query CCDS DB by Protein ID:NP_081480Link to BLAST:NP_081480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081480.2 201 Q9DB15 201 100% 0 0

Chromosomal Locations for CCDS 25737.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120484692 120484768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 120485243 120485429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 120485656 120485742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 120488097 120488234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 120488318 120488434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGCTGCCGGTGGCGGCTAGCCGCTGCCTGTGGGGGCCACGGCTTGGACTCCGGGGGGCAGCGCTTCGCC
TT
GCCAGGCAACAGATGCCCAGCGTCTGTGCAGCGCGGCAGTTGAGAAGCAGCAGCCACCGAAGGAGTGA
A
GCACTCGCCGGCGCACCTCTGGATAATGCTCCCAAAGAATACCCCCCCAAGATCCAGCAGCTGGTCCAA
GAC
ATTGCCAGCCTTACGCTCCTGGAGATCTCAGACCTCAACGAACTCCTGAAGAAAACATTGAAGATCC
AG
GATGTCGGCCTTATGCCAATGGGTGGCATGGTGCCTGGTCCCGTCTCTGCTGCAGCACCGGCCTCTGA
G
GCGGCCGAGGAGGAAGACGTCCCCAAACAGAAAGAGCGGACACACTTCACCGTCCGCCTGACAGAGGCA
AAG
CCTGTGGACAAAGTAAAGCTGATCAAGGAGATCAAGAACTACGTCCAGGGCATCAACCTCGTCCAGG
CC
AAGAAGCTGGTAGAGTCCCTGCCCCAGGAAATCAAAGCCAACGTCGCCAAAGCTGAGGCCGAGAAGAT
C
AAAGCAGCCTTGGAGGCAGTGGGTGGCACCGTGGTTCTGGAGTGA


Translation (201 aa):
MLPVAASRCLWGPRLGLRGAALRLARQQMPSVCAARQLRSSSHRRSEALAGAPLDNAPKEYPPKIQQLVQ
D
IASLTLLEISDLNELLK
KTLKIQDVGLMPMGGMVPGPVSAAAPASEAAEEEDVPKQKERTHFTVRLTEA
K
PVDKVKLIKEIKNYVQGINLVQ
AKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser