NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25622.1 Public Mus musculus 11 Nat9 23 108 98 CCDS HistoryNCBI Gene:66176Re-query CCDS DB by CCDS ID:25622.1Re-query CCDS DB by GeneID:66176See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103038.7 ENSMUSP00000099327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103038.7Link to Ensembl Protein Viewer:ENSMUSP00000099327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103038Re-query CCDS DB by Protein ID:ENSMUSP00000099327
Original member Current member EBI ENSMUST00000103039.1 ENSMUSP00000099328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103039.1Link to Ensembl Protein Viewer:ENSMUSP00000099328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103039Re-query CCDS DB by Protein ID:ENSMUSP00000099328
Original member Current member EBI ENSMUST00000103040.10 ENSMUSP00000099329.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103040.10Link to Ensembl Protein Viewer:ENSMUSP00000099329.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103040Re-query CCDS DB by Protein ID:ENSMUSP00000099329
Original member Current member EBI ENSMUST00000103041.7 ENSMUSP00000099330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103041.7Link to Ensembl Protein Viewer:ENSMUSP00000099330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103041Re-query CCDS DB by Protein ID:ENSMUSP00000099330
Original member Current member NCBI NM_001362889.1 NP_001349818.1 Accepted alive Link to Nucleotide Sequence:NM_001362889.1Link to Protein Sequence:NP_001349818.1Re-query CCDS DB by Nucleotide ID:NM_001362889Re-query CCDS DB by Protein ID:NP_001349818Link to BLAST:NP_001349818.1
Original member Current member NCBI NM_001362890.1 NP_001349819.1 Accepted alive Link to Nucleotide Sequence:NM_001362890.1Link to Protein Sequence:NP_001349819.1Re-query CCDS DB by Nucleotide ID:NM_001362890Re-query CCDS DB by Protein ID:NP_001349819Link to BLAST:NP_001349819.1
Original member Current member NCBI NM_025400.4 NP_079676.1 Accepted alive Link to Nucleotide Sequence:NM_025400.4Link to Protein Sequence:NP_079676.1Re-query CCDS DB by Nucleotide ID:NM_025400Re-query CCDS DB by Protein ID:NP_079676Link to BLAST:NP_079676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349818.1 241 Q3UG98 241 100% 0 0
NP_001349819.1 241 Q3UG98 241 100% 0 0
NP_079676.1 241 Q3UG98 241 100% 0 0

Chromosomal Locations for CCDS 25622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115183026 115183265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115183355 115183449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115183625 115183684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115184483 115184626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115185007 115185116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115186749 115186825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAAGCTGAATCAGAACACCATGCTAGTGGGCAAGAAGGTGGTCCTGGTACCCTACACCTCCGAGCATG
TG
CCCAGATACCACGAGTGGATGAAGTCAGAAGAACTGCGGCATCTGACAGCCTCAGAGCAGCTGACCCT
A
CAGCAGGAGTATGAGATGCAGTGTAGCTGGTGTGAAGATGAAGACAAGTGCACCTTCATTGTGCTGGAT
GCA
GAGAAATGGCAGGCCCAGCCTCGGCCCCCTGAAGAGAGCTGCATGGTGGGAGATGTGAACCTCTTCC
TC
ACAGACCTTGAAGACCCCACCTTGGGGGAGATCGAGGTCATGATTGCAGAGCCTAGCTACAGGCGGCA
G
GGACTTGGCACTGAGGCGTCTCTCCTGATCATGTCCTACGGTGTGACGAAGTTAGGTCTGACCAAGTTT
GAG
GCCAAAATCGGGCAAGAAAATGAACCTAGCATCCGGATGTTCCAGAAACTTCACTTTAAGCAGGTGG
CT
ATGAGCAACGTCTTCCAGGAGGTGACACTCAGGCTGGCAGTGAGCGAGCCAGAGCGGAAGTGGATTCT
A
GAGCAGACGAGCCACATGGAAGAGAGACCCTACAGGACCAGGAAGGCCGAGCCTGTGACAGCCACCCTG
AGC
GAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGACGGCTGCATGGGAGACACAAGTGCAGTCT
CT
TCAGTCTGCGCCAGGCTCTCCTGA


Translation (241 aa):
MKLNQNTMLVGKKVVLVPYTSEHVPRYHEWMKSEELRHLTASEQLTLQQEYEMQCSWCEDEDKCTFIVLD
A
EKWQAQPRPPEESCMVGDVNLFLTDLEDPTLGEIEVMIA
EPSYRRQGLGTEASLLIMSYGVTKLGLTKF
E
AKIGQENEPSIRMFQKLHFKQ
VAMSNVFQEVTLRLAVSEPERKWILEQTSHMEERPYRTRKAEPVTATL
S
EQKSWNCPLPRPDGCMGDTSAVSSVCARLS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser