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Report for CCDS25369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25369.1 Public Mus musculus 11 Gjd3 23 108 98 CCDS HistoryNCBI Gene:353155Re-query CCDS DB by CCDS ID:25369.1Re-query CCDS DB by GeneID:353155See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062931.1 ENSMUSP00000055246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062931.1Link to Ensembl Protein Viewer:ENSMUSP00000055246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000062931Re-query CCDS DB by Protein ID:ENSMUSP00000055246
Original member Current member NCBI NM_178596.3 NP_848711.2 Accepted alive Link to Nucleotide Sequence:NM_178596.3Link to Protein Sequence:NP_848711.2Re-query CCDS DB by Nucleotide ID:NM_178596Re-query CCDS DB by Protein ID:NP_848711Link to BLAST:NP_848711.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848711.2 278 Q91YD1 278 100% 0 0

Chromosomal Locations for CCDS 25369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98982180 98983016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGGGGAGTGGGCGTTCCTAGGCTCCCTGCTGGACGCGGTGCAGCTACAGTCGCCGCTCGTGGGTCGTC
TCTGGCTGGTGATCATGCTGATCTTCCGCATCCTGGTGCTGGCCACGGTGGGAGGTGCGGTGTTCGAGGA
CGAGCAGGAGGAGTTCGTGTGTAACACGTTGCAGCCCGGCTGTCGCCAGACCTGCTACGATCGCGCCTTC
CCGGTGTCCCACTACCGCTTCTGGCTCTTCCACATCCTGCTGCTGTCGGCGCCGCCGGTGCTGTTCGTCA
TCTACTCCATGCACCAGGCCAGCAAGGAGGCGGGTGGTGCGCAGCTGGCCCCGCCGTGCGCGCGCGGGCG
TGCCGAGGCGCCGTGCTCCCCGTGCGCCCTGCGCGCTCGCCGCGCGCGCCGCTGCTACCTGCTGAGCGTG
GCTCTGCGCCTGCTCGCCGAGCTGGCTTTCCTGGGCGGCCAGGCGCTGCTCTACGGCTTCCGCGTGGACC
CGCACTACGCGTGCGCCGGGCCACCTTGTCCGCACACGGTCGACTGTTTCGTGAGCCGGCCCACCGAGAA
GACCGTCTTCGTGGTCTTCTACTTCGCCGTCGGGCTGCTGTCGGCGCTGCTCAGCGTGGCGGAGCTGGGT
CACCTGCTCTGGAAGGGTCGCCAGCGCGCCAAGCTGCTCCCGCCGCCGCCGCCGTCGCCCTCTTTGCCAT
CGCAGCGCGGGGACCCCGACCCTTTCGGCCCGCCAGCCTACGCGCACCGCTCACCGGCAGGCGACAGCGA
GGGCGAAGGCGGCAGCGGCCACAGCAAAGCGTCGCTGGCTACCGTGCGCCAGGACCTGGCCATCTAG

Translation (278 aa):
MGEWAFLGSLLDAVQLQSPLVGRLWLVIMLIFRILVLATVGGAVFEDEQEEFVCNTLQPGCRQTCYDRAF
PVSHYRFWLFHILLLSAPPVLFVIYSMHQASKEAGGAQLAPPCARGRAEAPCSPCALRARRARRCYLLSV
ALRLLAELAFLGGQALLYGFRVDPHYACAGPPCPHTVDCFVSRPTEKTVFVVFYFAVGLLSALLSVAELG
HLLWKGRQRAKLLPPPPPSPSLPSQRGDPDPFGPPAYAHRSPAGDSEGEGGSGHSKASLATVRQDLAI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser

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