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Report for CCDS25352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25352.1 Public Mus musculus 11 Ikzf3 23 108 98 CCDS HistoryNCBI Gene:22780Re-query CCDS DB by CCDS ID:25352.1Re-query CCDS DB by GeneID:22780See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103141.3 ENSMUSP00000099430.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103141.3Link to Ensembl Protein Viewer:ENSMUSP00000099430.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103141Re-query CCDS DB by Protein ID:ENSMUSP00000099430
Original member Current member NCBI NM_011771.1 NP_035901.1 Accepted alive Link to Nucleotide Sequence:NM_011771.1Link to Protein Sequence:NP_035901.1Re-query CCDS DB by Nucleotide ID:NM_011771Re-query CCDS DB by Protein ID:NP_035901Link to BLAST:NP_035901.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035901.1 507 O08900 507 100% 0 0

Chromosomal Locations for CCDS 25352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98466986 98467686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98476927 98477043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98485574 98485690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98488852 98489019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98490332 98490589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98516851 98516952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98518675 98518728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98545744 98545750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGAAGATATACAACCGACTGTGGAGCTGAAAAGCACGGAGGAGCAGCCTCTGCCCACAGAGAGCCCAG
ACGCTCTGAATGACTACAGCTTGCCCAAACCTCATGAGATAGAAAACGTGGACAGTAGAGAAGCCCCAGC
CAATGAAGACGAAGATGCAGGAGAAGATTCGATGAAAGTGAAAGATGAATACAGCGACAGAGATGAGAAC
ATTATGAAGCCGGAGCCCATGGGAGATGCAGAAGAGAGTGAAATGCCTTACAGCTATGCAAGAGAATACA
GCGACTATGAAAGCATTAAGCTGGAGAGACACGTGCCCTATGACAACAGCAGACCAACCGGTGGGAAGAT
GAACTGCGACGTGTGCGGGTTATCCTGCATTAGCTTCAACGTCTTGATGGTTCATAAGCGAAGCCATACC
GGCGAACGCCCGTTCCAGTGTAATCAGTGCGGGGCATCTTTTACTCAGAAAGGTAACCTCCTCCGTCATA
TTAAACTGCACACGGGGGAAAAACCTTTTAAGTGTCACCTCTGCAACTACGCATGCCAAAGGAGAGATGC
GCTCACGGGACACCTTAGGACACATTCTGTGGAGAAGCCGTACAAGTGTGAGTTCTGCGGAAGAAGCTAC
AAGCAGAGAAGCTCCCTGGAGGAGCACAAGGAACGCTGCCGAGCTTTTCTTCAGAACCCTGACCTGGGGG
ACGCTGCAAGTGTGGAGGCAAGACACATCAAAGCCGAGATGGGAAGTGAGAGAGCTCTCGTCCTGGACAG
ATTAGCAAGCAATGTGGCTAAGCGAAAAAGCTCGATGCCTCAGAAATTCATCGGTGAGAAGCGGCACTGC
TTCGATGCCAACTACAATCCCGGCTACATGTACGAGAAGGAGAACGAGATGATGCAGACCCGGATGATGG
ACCAAGCCATCAATAACGCCATCAGCTATCTAGGGGCTGAAGCCCTTCGCCCCTTAGTCCAGACTCCGCC
TGCTCCCACCTCTGAGATGGTCCCAGTCATCAGCAGTGTGTACCCCATAGCACTTACTCGGGCCGATATG
CCCAATGGGGCCCCGCAGGAGATGGAAAAGAAACGGATCCTCCTGCCAGAGAAGATCTTGCCTTCTGAAC
GAGGTCTGTCCCCCAATAACAGTGCCCAGGACTCCACAGACACCGACAGCAACCACGAGGATCGCCAACA
TCTCTACCAGCAAAGCCACGTGGTCCTCCCCCAGGCCCGCAATGGGATGCCTCTTCTGAAGGAGGTCCCT
CGCTCTTTTGAACTCCTCAAGCCCCCTCCCATCTGCCTGAGGGACTCCATCAAAGTGATCAACAAAGAAG
GGGAGGTGATGGATGTGTTTCGATGTGACCACTGCCACGTCCTCTTCCTAGATTATGTGATGTTCACCAT
CCACATGGGGTGCCATGGTTTCCGTGATCCCTTTGAGTGTAACATGTGTGGCTATCGAAGCCACGATCGC
TATGAGTTCTCCTCTCACATCGCCAGAGGAGAGCACAGAGCCATGTTGAAGTGA

Translation (507 aa):
MEDIQPTVELKSTEEQPLPTESPDALNDYSLPKPHEIENVDSREAPANEDEDAGEDSMKVKDEYSDRDEN
IMKPEPMGDAEESEMPYSYAREYSDYESIKLERHVPYDNSRPTGGKMNCDVCGLSCISFNVLMVHKRSHT
GERPFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCNYACQRRDALTGHLRTHSVEKPYKCEFCGRSY
KQRSSLEEHKERCRAFLQNPDLGDAASVEARHIKAEMGSERALVLDRLASNVAKRKSSMPQKFIGEKRHC
FDANYNPGYMYEKENEMMQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMVPVISSVYPIALTRADM
PNGAPQEMEKKRILLPEKILPSERGLSPNNSAQDSTDTDSNHEDRQHLYQQSHVVLPQARNGMPLLKEVP
RSFELLKPPPICLRDSIKVINKEGEVMDVFRCDHCHVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDR
YEFSSHIARGEHRAMLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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