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Report for CCDS25106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25106.1 Public Mus musculus 11 Vtn 23 108 98 CCDS HistoryNCBI Gene:22370Re-query CCDS DB by CCDS ID:25106.1Re-query CCDS DB by GeneID:22370See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017488.4 ENSMUSP00000017488.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017488.4Link to Ensembl Protein Viewer:ENSMUSP00000017488.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000017488Re-query CCDS DB by Protein ID:ENSMUSP00000017488
Original member Current member NCBI NM_011707.2 NP_035837.1 Accepted alive Link to Nucleotide Sequence:NM_011707.2Link to Protein Sequence:NP_035837.1Re-query CCDS DB by Nucleotide ID:NM_011707Re-query CCDS DB by Protein ID:NP_035837Link to BLAST:NP_035837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035837.1 478 P29788 478 100% 0 0

Chromosomal Locations for CCDS 25106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78499350 78499413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78499503 78499622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78499701 78500042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78500122 78500261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78500429 78500585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78500695 78500847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78501574 78501924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78502138 78502247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCACCCCTGAGGCCCTTTTTCATACTAGCCCTGGTGGCATGGGTTTCTCTGGCTGACCAAGAGTCAT
GC
AAGGGCCGCTGCACTCAGGGTTTCATGGCCAGCAAGAAGTGTCAGTGTGACGAGCTTTGCACTTACTA
T
CAGAGCTGCTGTGCCGACTACATGGAGCAGTGCAAGCCCCAAGTAACGCGGGGGGACGTGTTCACTATG
CCA
GAGGATGATTATTGGAGCTATGACTACGTGGAGGAGCCCAAGAACAATACCAACACCGGTGTGCAAC
CC
GAGAACACCTCTCCACCCGGTGACCTAAATCCTCGGACGGACGGCACTCTAAAGCCGACAGCCTTCCT
A
GATCCTGAGGAACAGCCAAGCACCCCAGCGCCTAAAGTGGAGCAACAGGAGGAGATCCTAAGGCCCGAC
ACC
ACTGATCAAGGGACCCCTGAGTTTCCAGAGGAAGAACTGTGCAGTGGAAAGCCCTTTGACGCCTTCA
CG
GATCTCAAGAATGGGTCCCTCTTTGCCTTCCGAGGGCAGTACTGCTATGAGCTAGATGAGACGGCAGT
G
AGGCCTGGGTACCCCAAACTTATCCAAGATGTCTGGGGCATTGAGGGCCCCATCGATGCTGCCTTCACT
CGC
ATCAACTGTCAGGGGAAGACCTACTTGTTCAAGGGTAGTCAGTACTGGCGCTTTGAGGATGGGGTCC
TG
GACCCTGGTTATCCCCGAAACATCTCCGAAGGCTTCAGTGGCATACCAGACAATGTTGATGCAGCGTT
C
GCCCTTCCTGCCCACCGTTACAGTGGCCGGGAAAGGGTCTACTTCTTCAAGGGGAAGCAGTACTGGGAG
TAC
GAATTTCAGCAGCAACCCAGCCAGGAGGAGTGCGAAGGCAGCTCTCTGTCAGCCGTGTTTGAGCACT
TT
GCCTTGCTTCAGCGGGACAGCTGGGAGAACATTTTCGAACTCCTCTTCTGGGGCAGATCCTCTGATGG
A
GCCAGAGAACCCCAATTCATCAGCCGGAACTGGCATGGTGTGCCAGGGAAAGTGGACGCTGCTATGGCC
GGC
CGCATCTACGTCACTGGCTCCTTATCCCACTCTGCCCAAGCCAAAAAACAGAAGTCTAAGCGTAGAA
GC
CGAAAGCGCTATCGTTCACGCCGAGGGCGTGGCCACAGACGCAGCCAGAGCTCGAACTCCCGTCGTTC
A
TCACGTTCAATCTGGTTCTCTTTGTTCTCCAGCGAGGAGAGTGGGCTAGGAACCTACAACAACTATGAT
TAT
GATATGGACTGGCTTGTACCTGCCACCTGCGAGCCCATTCAGAGCGTCTATTTCTTCTCTGGAGACA
AA
TACTACCGAGTCAACCTTAGAACCCGGCGAGTGGACTCTGTGAATCCTCCCTACCCACGCTCCATTGC
T
CAGTATTGGCTGGGCTGCCCGACCTCTGAGAAGTAG


Translation (478 aa):
MAPLRPFFILALVAWVSLADQESCKGRCTQGFMASKKCQCDELCTYYQSCCADYMEQCKPQVTRGDVFTM
P
EDDYWSYDYVEEPKNNTNTGVQPENTSPPGDLNPRTDGTLKPTAFLDPEEQPSTPAPKVEQQEEILRPD
T
TDQGTPEFPEEELCSGKPFDAFTDLKNGSLFAFR
GQYCYELDETAVRPGYPKLIQDVWGIEGPIDAAFT
R
INCQGKTYLFK
GSQYWRFEDGVLDPGYPRNISEGFSGIPDNVDAAFALPAHRYSGRERVYFFKGKQYWE
Y
EFQQQPSQEECEGSSLSAVFEHFALLQRDSWENIFELLFWGRSS
DGAREPQFISRNWHGVPGKVDAAMA
G
RIYVTGSLSHSAQAKKQKSKRRSRKRYRSRRGRGHRRSQSSNSRRSSRSIWFSLFSSEESGLGTYNNYD
Y
DMDWLVPATCEPIQSVYFFSG
DKYYRVNLRTRRVDSVNPPYPRSIAQYWLGCPTSEK



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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