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Report for CCDS25008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25008.1 Public Mus musculus 11 Olfr1 21 106 86 CCDS HistoryNCBI Gene:258923Re-query CCDS DB by CCDS ID:25008.1Re-query CCDS DB by GeneID:258923See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000120303 ENSMUSP00000113707 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120303Link to Ensembl Protein Viewer:ENSMUSP00000113707Re-query CCDS DB by Nucleotide ID:ENSMUST00000120303Re-query CCDS DB by Protein ID:ENSMUSP00000113707
Original member Current member EBI,WTSI OTTMUST00000013864 OTTMUSP00000006435 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000013864Link to Vega Protein Viewer:OTTMUSP00000006435Re-query CCDS DB by Nucleotide ID:OTTMUST00000013864Re-query CCDS DB by Protein ID:OTTMUSP00000006435
Original member Current member NCBI NM_146921.2 NP_667132.1 Accepted alive Link to Nucleotide Sequence:NM_146921.2Link to Protein Sequence:NP_667132.1Re-query CCDS DB by Nucleotide ID:NM_146921Re-query CCDS DB by Protein ID:NP_667132Link to BLAST:NP_667132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667132.1 314 Q8VGI1 314 100% 0 0

Chromosomal Locations for CCDS 25008.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73395076 73396020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGACAGAAAGGAACAAAACTGTCATCTCCCAGTTCCTCCTCCTGGGCCTACCCATTCCACCAGAGCACC
AG
CAACTGTTCTATGCCCTGTTCCTGGTCATGTACCTCACCACCGTCCTGGGGAACCTCATCATCATCAT
T
CTCATAATACTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAC
CTT
TGTTTCTCCTCTGTCACAATGCCCAAGTTGCTGCAGAACATGCAGAGCCAAGTTCCATCGATTCCCT
AT
GCAGGTTGCCTGGCACAAATATACTTCTTTCTGTTTTTTGGAGACCTTGGGAACTTTCTCCTTGTGGC
C
ATGGCCTACGACCGCTATGTGGCCATCTGTTACCCCCTTCATTACACCACCATCATGAGCCCCAGGCTC
TGT
GTGAGTCTAGTGGTGCTGTCCTGGGTGCTGACCACCTTCCATGCCATGCTGCACACCCTGCTTATGG
CC
AGATTGTCATTCTGTGAGGACAATGTGATCCCTCACTATTTCTGTGATATGTCTGCTCTGCTAAAGCT
G
GCCTGCTCTGACACCCGTGTTAATGAGGTGGTGATATTTATTGTGGCCAGCATCTTTCTTGTCCTTCCA
TTT
GCACTCATTACCATGTCCTATGTAAGAATTGTGTCTTCCATTCTCAAGGTCCCTTCTTCTCAAGGTA
TC
TACAAAGCCTTCTCCACATGTGGATCTCACCTGTCTGTAGTGTCACTGTTCTATGGGACAGTCATTGG
T
CTCTACTTATCTCCTTCCAGTAATAATTCTACTGTGAAGGATACTGTCATGTCTTTAATGTACACAGTG
GTG
ACTCCCATGCTGAACCCCTTTATCTACAGCCTGAGGAACAGAGACATAAAGGGGGCTCTGGAAAGAG
TC
TTTTGCAAAAGGAAAATTCAACTAAACCTATAA


Translation (314 aa):
MTERNKTVISQFLLLGLPIPPEHQQLFYALFLVMYLTTVLGNLIIIILIILDSHLHTPMYLFLSNLSFSD
L
CFSSVTMPKLLQNMQSQVPSIPYAGCLAQIYFFLFFGDLGNFLLVAMAYDRYVAICYPLHYTTIMSPRL
C
VSLVVLSWVLTTFHAMLHTLLMARLSFCEDNVIPHYFCDMSALLKLACSDTRVNEVVIFIVASIFLVLP
F
ALITMSYVRIVSSILKVPSSQGIYKAFSTCGSHLSVVSLFYGTVIGLYLSPSSNNSTVKDTVMSLMYTV
V
TPMLNPFIYSLRNRDIKGALERVFCKRKIQLNL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser