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Report for CCDS24912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24912.1 Public Mus musculus 11 Spem2 23 108 98 CCDS HistoryNCBI Gene:108803Re-query CCDS DB by CCDS ID:24912.1Re-query CCDS DB by GeneID:108803See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056941.2 ENSMUSP00000051204.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056941.2Link to Ensembl Protein Viewer:ENSMUSP00000051204.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000056941Re-query CCDS DB by Protein ID:ENSMUSP00000051204
Original member Current member NCBI NM_175368.2 NP_780577.1 Accepted alive Link to Nucleotide Sequence:NM_175368.2Link to Protein Sequence:NP_780577.1Re-query CCDS DB by Nucleotide ID:NM_175368Re-query CCDS DB by Protein ID:NP_780577Link to BLAST:NP_780577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780577.1 503 Q8C5U4 503 100% 0 0

Chromosomal Locations for CCDS 24912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69816626 69817941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69818047 69818104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69818260 69818397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGAAAACCAGCTGTGGCAGAACACCCTGAGGTGCTGCGAGCAATACCAAGAAAGCCCTCAGGATGCTG
AGAACATCTTGTTCCTGCTGCTGGGCCTCATCATTCTGGTCAACATCAGCATCAATGTGGCAACCGCGAT
GTGGCAGGGGCTCCAGAATGCCATAGACAAGATGATCTTTTGGATGAACCAGAAAACAGAAGTAGTCCAG
GTTACCGAATGTCCCCCCAAAGAGCCCCAACCAGCCAACGTCCAGGACGTCCACATCCACTGTATCCTGG
ACCCTGTACAAGTGAAGATGGCCCAACCCACACAGTGTTCCTCTTCCTCTTCCCACTATTTTTGCAAGCG
CTCTAATGACAGGCGCAGCCGCAGGCGCTACGGCTACCAACAGGGCAACCTTCAGATCCACCAAAGCAGC
CAGCAACAGGGCTGCCTCAGCCACCAGCAGAGACTTCGCAACAGGCCACTCTCCCGTGGCTACCCACCCT
TTCGTAAACAACCTCAAGGCCACAAGATGTCACAGATGAGGCCAATGCCCTTTTTTGACATGGAAGACCG
GGATTCCCTTCCGGAGGGTCATTCCTGCCCGCATGCCAAGCAACCCCGTCGGGGCTGGGGTAGTTTGTGT
AAGCCAGTCCGTCTGGCCTCCAATGTGGGACTGTGGGGTCGCCAGGGTGGAATCCTTGCCAGCCTCCCAT
TACCCTCCCTCTACCTGTCACCAGAGCTGCGCCGCTTGCCTAAGCGAGTAGAGGCCAAATCAGAACTGAG
GCTACAGGGCTTCGGTCCTCATTATTCACAGTCCCGGATTTGGGGTACCGTGGAAGCTGAGCAGTGGGCC
TCATCACCACCTCCTCCCCGCCGGCTGCTTCCTAACCCTTCCTGGGTCACTGTGGGTTATAGCTCTTTCC
CTTCAGGGGGCCACATACCTTATGATGCCAGGGATCAGTGGAGGCGCGGGACAGAAGGCTGTGAGCCACC
ACCTGCCTTTGTACCCAGGAACCCCAGAGAGGTCCAAGGCTACCGGGACCACAACTCCCAGGCCCACCGG
CAGAACTTCTCTAGTCATACTCACAGCCAACCCAACCACAGCCCACCACAATCCATGGGACACGTGGGTT
ACAGCTCCCGGGAATCTCACGAAGTCCGCAGGCGGGCCCCTGACTGGATTGAGGTTTTCCCCTCTCGTCA
TCCTCTGACCACCTCTACCTCCCTTACGGCCTTGGGTGAGGCTTCATACCAAAGGGCCCCACCAGCCAGC
TCGGGCCTGATGATCCCACACTCCTCCCAGCGCTTGGCGGAAGTCCAGATTTCTGATCCAACCCCACCTC
CAACCACCTTTGTTCCACTCAGTCGGAATCCAGGTGGCAATGCCACCTACCAGGTGTATGACAGCCTGGA
GCTGAAGAGGCAGGTGCAGGAGAACAGAGGGCGGGCCAGCTCGCTACCACCGCCTTCCACCTCAGCTTCA
AGGCCCTCTCTGCATAGAAGCCGGACAGGGAAACTTAACTGA

Translation (503 aa):
MENQLWQNTLRCCEQYQESPQDAENILFLLLGLIILVNISINVATAMWQGLQNAIDKMIFWMNQKTEVVQ
VTECPPKEPQPANVQDVHIHCILDPVQVKMAQPTQCSSSSSHYFCKRSNDRRSRRRYGYQQGNLQIHQSS
QQQGCLSHQQRLRNRPLSRGYPPFRKQPQGHKMSQMRPMPFFDMEDRDSLPEGHSCPHAKQPRRGWGSLC
KPVRLASNVGLWGRQGGILASLPLPSLYLSPELRRLPKRVEAKSELRLQGFGPHYSQSRIWGTVEAEQWA
SSPPPPRRLLPNPSWVTVGYSSFPSGGHIPYDARDQWRRGTEGCEPPPAFVPRNPREVQGYRDHNSQAHR
QNFSSHTHSQPNHSPPQSMGHVGYSSRESHEVRRRAPDWIEVFPSRHPLTTSTSLTALGEASYQRAPPAS
SGLMIPHSSQRLAEVQISDPTPPPTTFVPLSRNPGGNATYQVYDSLELKRQVQENRGRASSLPPPSTSAS
RPSLHRSRTGKLN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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