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Report for CCDS24466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24466.1 Public Mus musculus 11 Mdh1 23 108 98 CCDS HistoryNCBI Gene:17449Re-query CCDS DB by CCDS ID:24466.1Re-query CCDS DB by GeneID:17449See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102874.10 ENSMUSP00000099938.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102874.10Link to Ensembl Protein Viewer:ENSMUSP00000099938.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102874Re-query CCDS DB by Protein ID:ENSMUSP00000099938
Original member Current member EBI ENSMUST00000239073.1 ENSMUSP00000159017.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239073.1Link to Ensembl Protein Viewer:ENSMUSP00000159017.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239073Re-query CCDS DB by Protein ID:ENSMUSP00000159017
Original member Current member NCBI NM_008618.3 NP_032644.3 Accepted alive Link to Nucleotide Sequence:NM_008618.3Link to Protein Sequence:NP_032644.3Re-query CCDS DB by Nucleotide ID:NM_008618Re-query CCDS DB by Protein ID:NP_032644Link to BLAST:NP_032644.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032644.3 334 P14152 334 100% 0 0

Chromosomal Locations for CCDS 24466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 21557443 21557568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21558462 21558551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21559192 21559305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21559699 21559875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21562865 21562987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21564041 21564216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21565824 21565920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21566620 21566718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21571730 21571732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGTCTGAACCAATCAGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCATATTCACTGTTGTACAGTA
TTGGAAATGGATCTGTCTTTGGGAAAGACCAGCCCATCATTCTTGTGCTGTTGGACATCACCCCCATGAT
GGGTGTTCTGGACGGTGTCCTGATGGAACTGCAAGACTGTGCCCTTCCCCTTCTGCAGGATGTCATTGCA
ACGGACAAAGAAGAGATTGCCTTCAAAGACCTGGATGTGGCTGTCCTAGTGGGCTCCATGCCAAGAAGGG
AAGGCATGGAGAGGAAGGACCTACTGAAAGCCAATGTGAAAATCTTCAAATCCCAGGGCACAGCCTTGGA
GAAATACGCCAAGAAATCAGTTAAGGTCATTGTTGTGGGAAACCCAGCCAATACGAACTGCCTGACAGCC
TCCAAGTCAGCGCCATCGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCTTGGACCACAACCGAGCAA
AATCTCAAATTGCTCTTAAACTCGGTGTAACCGCTGATGATGTAAAGAATGTCATTATCTGGGGAAATCA
TTCATCGACCCAGTATCCAGATGTCAATCATGCCAAGGTGAAACTGCAAGGAAAGGAAGTCGGTGTGTAT
GAAGCCCTGAAAGACGACAGCTGGCTGAAGGGAGAGTTCATCACGACTGTGCAACAGCGTGGTGCTGCTG
TCATCAAGGCTCGGAAGCTGTCCAGTGCAATGTCTGCTGCGAAAGCCATCGCAGACCACATCAGAGACAT
CTGGTTTGGAACCCCAGAGGGAGAGTTCGTGTCGATGGGTGTTATCTCTGATGGCAACTCCTATGGTGTC
CCTGATGACCTGCTCTACTCATTCCCTGTCGTGATCAAGAATAAGACCTGGAAGTTTGTTGAAGGCCTCC
CCATTAATGACTTCTCCCGTGAAAAGATGGACCTGACAGCAAAGGAGCTGACCGAGGAAAAGGAGACCGC
TTTTGAGTTTCTCTCCTCTGCGTGA

Translation (334 aa):
MSEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIA
TDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKSVKVIVVGNPANTNCLTA
SKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVY
EALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGV
PDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKETAFEFLSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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