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Report for CCDS24285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24285.1 Public Mus musculus 10 Suox 23 108 98 CCDS HistoryNCBI Gene:211389Re-query CCDS DB by CCDS ID:24285.1Re-query CCDS DB by GeneID:211389See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054764.8 ENSMUSP00000056195.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054764.8Link to Ensembl Protein Viewer:ENSMUSP00000056195.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054764Re-query CCDS DB by Protein ID:ENSMUSP00000056195
Original member Current member NCBI NM_173733.3 NP_776094.2 Accepted alive Link to Nucleotide Sequence:NM_173733.3Link to Protein Sequence:NP_776094.2Re-query CCDS DB by Nucleotide ID:NM_173733Re-query CCDS DB by Protein ID:NP_776094Link to BLAST:NP_776094.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776094.2 546 Q8R086 546 100% 0 0

Chromosomal Locations for CCDS 24285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128670517 128671926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128672104 128672281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128672539 128672591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGCTGCTGCAGCTATACAGATCCGTGGTTGTGAGGCTTCCACAGGCCATCAGAGTCAAGTCAACCCCCT
TGAGGCTCTGCATTCAAGCATGCTCCACAAATGATTCACTTGAGCCCCAGCATCCCAGCCTTACCTTTTC
TGATGATAACTCAAGGACTCGGAGATGGAAAGTCATGGGGACCCTGTTAGGCCTGGGTGTGGTGCTGGTC
TACCATGAGCATCGGTGTAGGGCTTCTCAGGAGTCACCACGGATGTACTCTAAAGAGGATGTGCGTTCTC
ACAACAACCCTAAAACTGGAGTCTGGGTAACTCTAGGCTCTGAGGTCTTCGATGTCACAAAATTTGTGGA
CCTGCATCCAGGAGGACCATCAAAACTGATGCTAGCAGCTGGAGGTCCCCTAGAACCCTTCTGGGCCCTC
TATGCTGTGCACAACCAGCCCCATGTACGTGAGTTACTGGCCGAGTATAAGATTGGGGAACTGAACCCCG
AAGATAGCATGTCCCCCTCCGTGGAAGCCTCTGACCCTTATGCTGATGATCCTATTCGTCATCCAGCCCT
GAGGATTAATAGCCAGCGCCCCTTTAATGCAGAGCCTCCTCCTGAACTGCTAACTGAAGGCTACATCACA
CCAAATCCTATTTTCTTCACCCGTAACCATCTGCCTGTACCTAACCTGGACCCACACACCTATCGCTTAC
ATGTAGTAGGGGCACCTGGAGGTCAGTCACTGTCTCTGTCCTTGGATGATTTGCATAAGTTTCCCAAACA
TGAGGTCACTGTCACTCTGCAGTGTGCTGGTAACCGGCGCTCCGAAATGAGTAAGGTCAAGGAAGTGAAA
GGTCTGGAATGGAGAACAGGGGCCATCAGCACAGCACGCTGGGCTGGGGCCCGGCTCTGTGATGTGTTAG
CCCAGGCTGGTCACCGACTCTGTGACTCTGAGGCCCATGTCTGTTTTGAAGGACTGGATTCAGACCCCAC
TGGAACTGCCTATGGAGCATCGATCCCTCTGGCTCGGGCCATGGATCCTGAAGCCGAGGTCCTCCTGGCT
TATGAAATGAATGGTCAGCCTCTACCTCGTGACCATGGCTTCCCTGTACGGGTGGTGGTTCCTGGTGTAG
TAGGTGCCCGTCATGTCAAATGGCTCGGCAGAGTGAGTGTGGAATCAGAGGAGAGTTATAGTCACTGGCA
GAGGCGGGATTACAAAGGCTTTTCTCCATCTGTGGACTGGGACACGGTAAACTTTGACCTAGCTCCATCA
ATTCAGGAACTACCTATCCAGTCAGCTATCACACAACCTCAAGATGGGGCCATTGTAGAGTCAGGCGAGG
TGACTATCAAGGGCTATGCATGGAGTGGTGGTGGCAGGGCTGTGATTCGAGTGGATGTGTCTGTGGATGG
GGGACTAACCTGGCAGGAAGCTGAGCTAGAGGGAGAGGAACAGTGTCCCAGGAAGGCCTGGGCTTGGCGA
ATATGGCAGTTGAAAGCTCAGGTGCCGGCTGAGCAAAAGGAATTGAACATCATTTGCAAAGCTGTAGATG
ACAGTTACAATGTGCAGCCAGACACTGTAGCCCCAATCTGGAACCTTCGGGGCGTACTCAGCAATGCCTG
GCACCGTGTCCATGTTCAGGTGGTCCCATGA

Translation (546 aa):
MLLQLYRSVVVRLPQAIRVKSTPLRLCIQACSTNDSLEPQHPSLTFSDDNSRTRRWKVMGTLLGLGVVLV
YHEHRCRASQESPRMYSKEDVRSHNNPKTGVWVTLGSEVFDVTKFVDLHPGGPSKLMLAAGGPLEPFWAL
YAVHNQPHVRELLAEYKIGELNPEDSMSPSVEASDPYADDPIRHPALRINSQRPFNAEPPPELLTEGYIT
PNPIFFTRNHLPVPNLDPHTYRLHVVGAPGGQSLSLSLDDLHKFPKHEVTVTLQCAGNRRSEMSKVKEVK
GLEWRTGAISTARWAGARLCDVLAQAGHRLCDSEAHVCFEGLDSDPTGTAYGASIPLARAMDPEAEVLLA
YEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVESEESYSHWQRRDYKGFSPSVDWDTVNFDLAPS
IQELPIQSAITQPQDGAIVESGEVTIKGYAWSGGGRAVIRVDVSVDGGLTWQEAELEGEEQCPRKAWAWR
IWQLKAQVPAEQKELNIICKAVDDSYNVQPDTVAPIWNLRGVLSNAWHRVHVQVVP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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