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Report for CCDS23926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23926.1 Public Mus musculus 10 Snrpd3 23 108 98 CCDS HistoryNCBI Gene:67332Re-query CCDS DB by CCDS ID:23926.1Re-query CCDS DB by GeneID:67332See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020397.10 ENSMUSP00000020397.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020397.10Link to Ensembl Protein Viewer:ENSMUSP00000020397.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020397Re-query CCDS DB by Protein ID:ENSMUSP00000020397
Original member NCBI NM_026095.4 NP_080371.1 Updated not alive Link to Nucleotide Sequence:NM_026095.4Link to Protein Sequence:NP_080371.1Re-query CCDS DB by Nucleotide ID:NM_026095Re-query CCDS DB by Protein ID:NP_080371
Current member NCBI NM_026095.5 NP_080371.1 Accepted alive Link to Nucleotide Sequence:NM_026095.5Link to Protein Sequence:NP_080371.1Re-query CCDS DB by Nucleotide ID:NM_026095Re-query CCDS DB by Protein ID:NP_080371Link to BLAST:NP_080371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080371.1 126 P62320 126 100% 0 0

Chromosomal Locations for CCDS 23926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75519335 75519460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75532177 75532369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75535261 75535322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGTCTATTGGTGTGCCGATTAAAGTCTTGCACGAGGCTGAAGGCCACATAGTGACGTGTGAGACCAACA
CCGGGGAAGTATACCGAGGGAAGCTCATTGAAGCAGAGGACAACATGAACTGTCAGATGTCCAACATCAC
AGTCACATACAGAGATGGTCGAGTGGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTT
CTGATTTTGCCTGACATGCTGAAAAATGCACCCATGTTAAAGAGCATGAAAAATAAAAACCAAGGCTCAG
GGGCCGGCAGAGGAAAAGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGGGAGAGGACGTGGGATGGG
ACGTGGGAACATCTTCCAGAAGCGAAGATAA

Translation (126 aa):
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRF
LILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGNIFQKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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