NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23692.1 Public Mus musculus 10 Sash1 23 108 98 CCDS HistoryNCBI Gene:70097Re-query CCDS DB by CCDS ID:23692.1Re-query CCDS DB by GeneID:70097See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015449.5 ENSMUSP00000015449.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015449.5Link to Ensembl Protein Viewer:ENSMUSP00000015449.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000015449Re-query CCDS DB by Protein ID:ENSMUSP00000015449
Original member Current member NCBI NM_175155.4 NP_780364.3 Accepted alive Link to Nucleotide Sequence:NM_175155.4Link to Protein Sequence:NP_780364.3Re-query CCDS DB by Nucleotide ID:NM_175155Re-query CCDS DB by Protein ID:NP_780364Link to BLAST:NP_780364.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780364.3 1230 P59808 1230 99.9187% 0 1

Chromosomal Locations for CCDS 23692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 8725497 8725760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8727858 8727989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8729328 8730436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8733596 8733709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8739321 8739471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8740174 8740383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8741428 8741597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8742428 8742563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8744488 8744631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8746116 8746190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8751139 8751485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8756629 8756761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8780519 8780620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8784198 8784310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8786348 8786434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8789561 8789601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8814241 8814290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8814407 8814457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8850363 8850491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 8885724 8885858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3693 nt):
ATGGAGGAGGACGCGGGAGCTGCTAGCCCGGCGCCGGAGCCTGAGCCGGAGGTGGATCCCGCCCGGGAGC
TG
GAGCCCGAGGCCGGTGTCTCCGAGTCAATCTCCCGCCTCTGGACCGACGTGATGGGCATCCTGGATGG
T
TCCCTGGGAAACATTGATGACCTGGCACAGCAGTATGCAGATTATTACAATACCTGCTTTTCTGACGTG
TGT
GAGCGGATGGAGGAGCTCCGGAAACGGCGCGTTTCCCAGGACCTGGATGTGGAGAAACCCGACGCCA
GC
CCCACGTCACTTCAGCTGCGGTCCCAGATCGAAGAGTCTCTAGGCTTCTGCAGCGCCGTGTCAACACC
A
GAAGTGGAAAGAAAGTACCCTCTCCATAAATCAAACTCAGAAGACGGCTGTGTAGGCAAAGGAGATTGG
AAG
AAGAAAAATAAATACTTCTGGCAGAATTTCCGAAAGAACCAAAAAGGAATAATGAGACAGACTTCAA
AA
GGAGAAGATGTGGGCTATGTAGCCAGCGAGATTACGATGAGTGACGAGGAGCGGATTCAGCTGATGAT
G
ATGGTCAAGGAGAAAATGATCACCATTGAAGAAGCGCTCGCCAGGCTGAAGGAATACGAGGCCCAGCAC
CGT
CAGTCATCCACCTTGGACCCCGCAGACTGGCCCGATGGCTCCTACCCGACATTGGATGGCTCCTCCA
CC
TGCAACTCAAGAGAGCAGTCGGATGATGAGACAGAGGACTCGGTGAAGTTTAAGAGGTTGCACAAGCT
G
GTAAACTCTACTCGAAGAGTCAGAAAGAAACTAATTAGGGTGGAAGAAATGAAAAAGCCCAGCACAGAA
G
GT
GGAGAGGAACATGTATTTGAGAATTCCCCAGTCCAAGATGAAAGATCTGCACTCTACTCTGGAGTGC
AC
AAAAAGCCATTTTTCTATGATGGCTCTCCTGAGAAACCTCCAGAAGATGATGCAGACTCTCTCACCCC
A
TCTCCATCATCCAGCAGCCTGGATACGTGGGGAGCTGGCCGGAAGTTGGTCAAAACCTTCAGCAAAGGA
GAG
AGTCGGGGCCTGATTAAGCCCCCTAAGAAGATGGGGACATTCTTCTCCTATCCAGAAGAAGAGAAGG
CC
CAGAAAGTGTCCCGCTCCCTCACAGAGGGGGAAATGAAGAAAGGTCTTGGGTCTTTGAGTCACGGGAG
A
ACCTGCAGTTTTGGTGGATTCGACCTGACAAACCGTTCTCTGCATGTTGGCAGTAATAATTCTGACCCT
GCG
GGTAAAGAGGGAGATTTTGTGTACAAAGAAGTCATCAAATCCCCTCCTGCCCCCCGCATCTCTCTCG
GG
AAAAAGGTGAGATCAGTGAAAGAGACCATGAGGAAGAGGATGTCTAAAAAGTACAGCAGCCCGGTCTC
A
GAGCAGGACTCGGGGCTCGATGGAATGCCCAGCTCCCCCGCCTCAGGAAAGCCTGACTCCGAACACGTG
GAC
AAGCCTAAGCTCAAAGCCGGGGGCTCTGTGGAAAGCCTTCGGAGTTCTCTGAGTGGCCAGAGCTCAA
TG
AGTGGTCAGACAGTGAGCACCACTGATTCCTCCACCAGCAACCGGGAGAGTGTCAAGTCAGAAGATGG
G
GATGACGAAGAGCCACCCTATCGGGGTCCCTTCTGTGGGCGTGCCCGAGTGCACACTGACTTCACCCCC
AGT
CCCTATGACACGGACTCTCTGAAGCTCAAGAAAGGAGATATCATTGACATAATTAGCAAACCACCCA
TG
GGTACCTGGATGGGCCTGCTGAACAACAAAGTCGGCACGTTCAAGTTCATCTACGTGGATGTGCTAAA
T
GAGGAAGAGGAGAAGCCCAAGCGCCCTACCAGGAGGAGGAAGAAGGGAAGACCATCTCAGCCGAAGTCT
GTG
GAGGATCTCCTGGACCGGATCAACCTGAAAGAACACATGCCCACCTTCCTGTTCAATGGCTATGAAG
AC
CTGGACACCTTCAAACTCCTGGAGGAAGAAGACTTAGATGAATTAAATATCAGGGACCCAGAACACAG
A
GCAGTTCTTCTGACTGCGGTGGAGCTGTTGCAGGAATATGACAGTAACAGTGACCAGTCCGGTTCTCAG
GAA
AAGCTGCTGGTGGACAACCAGGGCCTGAGTGGACGATCCCCACGAGACTCCGGATGCTACGAAAGCA
GC
GAGAACTTGGAAAACGCCAAAACTCACAAACCCAGCGTTCTGTCTACCAAGTCGTCCACGGAGTCCAA
C
TTAAAGTCTTTCACCAGGAGTCAGCCAGGCAACTACCCGACATTGCCTTTAATGAAATCAGGGGAGGTG
CGC
AAGCAGGGAGAGGAGGGCAGGCTGGGACGAGGTCTAGCCCCGGACACTGCCAAGAGCTGTGACGTGC
CC
TCTGTGACTGATTTGAGTAAAAACCGAAGGAGCCTCCCGGTCTCCATCTGTCGCAGCTGTGAAACCCT
G
GAGGGTCCTGAGCCTGTGGAAAGTTGGCCCCGATCCCATTCCCTGGATGACCTTCAGGGAGATGCTGAT
GTT
GGCAAGAATGTGCCTACCGAGATGCCAGAAACCTGTTCTCAGAATGTACCAGAAGTGCCGCAGAAGA
CG
TCTGCCTGCACCTCCAAGGCTCTGCCACGAGGCCGAGATCCCACAGCAGATGTGATGCTTCTGACCCA
A
AGCAAGAGATTTTCCGACCCCCCGAAAACAATGGCTAAGAAACTGGATGGCTCCGTGGTGGCCTCCAAC
CTT
GGGATAGCTCCTCCTCAGTGTATACCCAGAGATTTCGAGGCCCAGCCGCCTGTTAAACCCGGCTTAA
CA
AGGACGTCTCTTGAGGGTCTCAGAAAAGGACATGATCACCACCCCCTGGGCACCAAAGAAGGGGTAGA
C
GGGGAGCAGAGCGCCCCTGAGACCAGGACACAGTCCCGACATCCGTCGCAGCCCCCTCCTGTGCCAGCC
AAG
AAAAGCCGAGAGCGCCTGGCCAATGGCCTGCACTTGGTCCCCAGCCCAGAGGCACCCATCCTGCCAC
TG
AAGAAAGCCAGCCCTGCCAGCCCAGTCAGTCCCAGCGACTGCCCCTCTCCCCGGGAACCCAGGCCTTC
C
TCCGGGACTGAGCCGGGCAGCCCAGCCTGTACGAGACCTCCACCCTGGCTGGCTGAGCTGCCCGAGAGC
ACT
AGCCTGCAGGAGCATGGTGTGAAACTGGGCCCAGTGCTGAGCAGGAAGGTTTCCTGTGTCCGGGGTG
TG
GACCTAGAGATGCTCACGGAGAACAAGCTGCAGGCGGAGGGCATTGATCTCACTGAGGAGCCCTACTC
T
GATAAGCATGGCCGTTGTGGGATCCCGGAAGCCCTGGTACAGAGATACGCAGAGGACCTAGAGCAGCCT
GAG
AGGGATGTTGCCACCAACATGGACCAGATCCGGGTGAAGCTGCTTCGGAAGCAACATCGGATGGCGA
TC
CCGAGTGGTGGGCTGACGGAAATCTGCAGAAAGCCCCTCTCTCCCGGCTGTGTTGCGTCCATGTCGGA
T
TGGCTCATCTCTATCGGCCTGCCCATGTACACGAGCACCCTTTCTGACGCAGGGTTCAGCACGCTGAGC
CAA
GTGCCTTCCCTGTCCCACTCTTGCCTTCAGGAGGCCGGCATCACCGAGGAGAGACACATAAGGAAAC
TC
ATAACGGCAGCCAGACTCTTCAAACTGCCACCAAGCCCTGAGGCTATGTAG


Translation (1230 aa):
MEEDAGAASPAPEPEPEVDPARELEPEAGVSESISRLWTDVMGILDGSLGNIDDLAQQYADYYNTCFSDV
C
ERMEELRKRRVSQDLDV
EKPDASPTSLQLRSQIEESLGFCSAVSTPEVERKYPLHKSNSEDGCVGKGDW
K
KKNKYFWQNFRKNQKGIMRQTSK
GEDVGYVASEITMSDEERIQLMMMVKEKMITIEEALARLKEYEAQH
R
QSSTLDPADWPDGSYPTLDGSSTCN
SREQSDDETEDSVKFKRLHKLVNSTRRVRKKLIRVEEMKKPSTE
G
GEEHVFENSPVQDERSALYSGVHKKPFFYDGSPEKPPEDDADSLTPSPSSSSLDTWGAGRKLVKTFSKG
E
SRGLIKPPKKMGTFFSYPEEEKAQKVSRSLTEGEMKKGLGSLSHG
RTCSFGGFDLTNRSLHVGSNNSDP
A
GKEGDFVYKEVIKSPPAPRISLGKKVRSVKETMRKRMSKKYSSPVSEQDSGLDGMPSSPASGKPDSEHV
D
KPKLKAGGSVESLRSSLSGQSSM
SGQTVSTTDSSTSNRESVKSEDGDDEEPPYRGPFCGRARVHTDFTP
S
PYDTDSLKLK
KGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLNEEEEKPKRPTRRRKKGRPSQPKS
V
EDLLDRINLK
EHMPTFLFNGYEDLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYDSNSDQSGSQ
E
KLLVDNQGLSGRSPRDSGCYESSENLEN
AKTHKPSVLSTKSSTESNLKSFTRSQPGNYPTLPLMKSGEV
R
KQGEEGRLGRGLAPDTAKSCDVPSVTDLSKNRRSLPVSICRSCETLEGPEPVESWPRSHSLDDLQGDAD
V
GKNVPTEMPETCSQNVPEVPQKTSACTSKALPRGRDPTADVMLLTQSKRFSDPPKTMAKKLDGSVVASN
L
GIAPPQCIPRDFEAQPPVKPGLTRTSLEGLRKGHDHHPLGTKEGVDGEQSAPETRTQSRHPSQPPPVPA
K
KSRERLANGLHLVPSPEAPILPLKKASPASPVSPSDCPSPREPRPSSGTEPGSPACTRPPPWLAELPES
T
SLQEHGVKLGPVLSRKVSCVRGVDLEMLTENKLQAEGIDLTEEPYSDK
HGRCGIPEALVQRYAEDLEQP
E
RDVATNMDQIRVKLLRKQHRMA
IPSGGLTEICRKPLSPGCVASMSDWLISIGLPMYTSTLSDAGFSTLS
Q
VPSLSHSCLQEAGITEERHIRKLITAARLFKLPPSPEAM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser