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Report for CCDS23689.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23689.2 Reviewed, update pending Mus musculus 10 Katna1 23 108 98 CCDS HistoryNCBI Gene:23924Re-query CCDS DB by CCDS ID:23689.2Re-query CCDS DB by GeneID:23924See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23689.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. This N-terminal extension is specific to mouse and rat. The updated start codon has a weak Kozak signal compared to a stronger Kozak signal for the much better conserved downstream start codon. It is possible that leaky scanning by ribosomes may allow the downstream start codon to be used at least some of the time, which would result in a 2 aa length difference at the N-terminus. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 23689.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165806.7 ENSMUSP00000132514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165806.7Link to Ensembl Protein Viewer:ENSMUSP00000132514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165806Re-query CCDS DB by Protein ID:ENSMUSP00000132514
Original member NCBI NM_011835.2 NP_035965.2 Updated not alive Link to Nucleotide Sequence:NM_011835.2Link to Protein Sequence:NP_035965.2Re-query CCDS DB by Nucleotide ID:NM_011835Re-query CCDS DB by Protein ID:NP_035965
Current member NCBI NM_011835.3 NP_035965.3 Pending alive Link to Nucleotide Sequence:NM_011835.3Link to Protein Sequence:NP_035965.3Re-query CCDS DB by Nucleotide ID:NM_011835Re-query CCDS DB by Protein ID:NP_035965Link to BLAST:NP_035965.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035965.3 491 Q9WV86 491 99.7963% 0 1

Chromosomal Locations for CCDS 23689.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7738730 7738897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7741408 7741565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7743556 7743736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7748776 7748897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7751544 7751649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7752744 7752902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7759697 7759823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7760735 7760869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7761243 7761369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7762790 7762988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGACCATGAGTCTTCAAATGATTGTTGAGAATGTAAAATTGGCTCGTGAATATGCACTGCTGGGAAACT
ATGACTCTGCAATGGTCTACTATCAGGGAGTTCTTGACCAAATGAACAAGTACCTGTACTCAGTCAAAGA
TACACACCTCCGTCAGAAATGGCAACAGGTTTGGCAGGAAATAAATGTGGAAGCTAAGCAAGTTAAGGAT
ATCATGAAAACACTCGAGAGCTTCAAACTAGACATCACTTCTTTGCAAGCTGCACAACATGAATTTCCAG
CTGCTGAAGGAGAAGTCTGGTCCTTGCCTGTACCTGTTGAGCGAAGACCCTTACCAGGACCTAGGAAACG
CCAGTCTTCTCAGCACAGTGACCCTAAGCCACACAGTAACCGGCCAAGCACAGTCGTCAGAGCTCATCGG
CCGTCTCCACAGAATCTTCACAATGACAGAGGGAAAGCTGTTCGTAGTCGTGAAAAGAAAGAACAGAGTA
AGGGAAGAGAGGAAAAGAACAAATTACCTGCTGCAGTTACAGAACCAGAGGCAAATAAGTTTGATGGCAC
TGGGTATGACAAGGACTTAGTAGAAGCTTTGGAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGG
TATGATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTACCAATGTGGATGC
CAGAATTCTTTAAGGGCATTAGGAGACCATGGAAAGGTGTGCTGATGGTTGGCCCACCTGGCACTGGAAA
GACCCTTCTAGCTAAAGCAGTTGCCACGGAATGCAAGACAACGTTCTTCAATGTCTCTTCATCAACTCTG
ACGTCCAAATACAGAGGAGAGTCTGAGAAGCTTGTCCGTCTTCTGTTTGAAATGGCTCGGTTTTACTCCC
CAGCTACCATATTTATTGATGAGATAGATTCCATTTGCAGCCGCCGAGGAACTTCTGAAGAGCATGAAGC
CAGCCGAAGGATGAAAGCTGAGCTGCTGGTTCAAATGGACGGTGTTGGAGGTGCCTCAGAGAACGATGAC
CCTTCCAAAATGGTTATGGTTCTGGCGGCTACTAATTTCCCATGGGACATAGATGAGGCTTTAAGGCGTC
GTCTGGAGAAAAGAATCTATATTCCATTACCATCAGCAAAAGGCAGGGAAGAACTGTTGAGAATAAGTCT
GCGAGAGCTGGAATTGGCTGATGATGTCAACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGT
GCAGACATTACCAATGTATGCAGGGACGCATCGTTGATGGCCATGAGACGGCGTATTGAGGGTCTAACCC
CAGAAGAAATCCGGAACCTTTCAAGAGAAGCAATGCACATGCCTACCACCATGGAGGATTTTGAAATGGC
TTTAAAGAAGATTTCTAAATCAGTATCAGCTGCAGATATTGAAAGATACGAGAAATGGATAGTTGAGTTT
GGATCATGCTAG

Translation (493 aa):
MTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD
IMKTLESFKLDITSLQAAQHEFPAAEGEVWSLPVPVERRPLPGPRKRQSSQHSDPKPHSNRPSTVVRAHR
PSPQNLHNDRGKAVRSREKKEQSKGREEKNKLPAAVTEPEANKFDGTGYDKDLVEALERDIISQNPNVRW
YDIADLVEAKKLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTL
TSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDD
PSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSG
ADITNVCRDASLMAMRRRIEGLTPEEIRNLSREAMHMPTTMEDFEMALKKISKSVSAADIERYEKWIVEF
GSC


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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