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Report for CCDS23343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23343.1 Public Mus musculus 9 Leo1 23 108 98 CCDS HistoryNCBI Gene:235497Re-query CCDS DB by CCDS ID:23343.1Re-query CCDS DB by GeneID:235497See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048937.5 ENSMUSP00000046905.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048937.5Link to Ensembl Protein Viewer:ENSMUSP00000046905.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048937Re-query CCDS DB by Protein ID:ENSMUSP00000046905
Original member Current member NCBI NM_001039522.1 NP_001034611.1 Accepted alive Link to Nucleotide Sequence:NM_001039522.1Link to Protein Sequence:NP_001034611.1Re-query CCDS DB by Nucleotide ID:NM_001039522Re-query CCDS DB by Protein ID:NP_001034611Link to BLAST:NP_001034611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034611.1 667 Q5XJE5-1 667 100% 0 0

Chromosomal Locations for CCDS 23343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75441578 75441635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75445235 75445993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75447102 75447206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75448302 75448396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75449357 75449502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75450488 75450572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75454624 75454718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75455641 75455775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75457058 75457193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75458075 75458261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75461006 75461103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75466194 75466298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGGCGGACATGGAGGACCTCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTG
AG
TCCGACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCA
G
GATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGGAGGGG
GCC
TCTCATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCT
CT
GACCACGAGGATAATGAGCCCTCTGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGA
C
GATGAGGGCCACAGGTCGGACGAAGGGAGCCGTCACTCAGAGGCAGAAGGGTCTGAAAAAGCCCAGTCA
GAT
GATGAGAAATGGGATGGAGAGGATAAAAGTGACCAGTCAGATGACGAGAAGCTGCAGAACTCTGACG
AC
GAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCA
G
AACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAGACAGCAGCTGTCTGAGGAGGAGAAG
GGG
AATTCTGACGATGAGCATCCAGTAGCTTCTGATAATGACGAGGAGAAGCAGAATTCGGACGATGAGG
AC
CAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTCAGACGATGAAAGGCCACAAGTCTCAGATGA
A
GATGGAAGGCGTTCAGACGGTGAGGAGGAGCAAGACCAGAAGTCAGAATCTGCAAGAGGCAGTGACAGT
GAA
GATGAAGTTTTACGACTGAAGCGCAAGAACGCGATTCCATCGGATTCCGAAGCAGACAGCGACACCG
AG
GTGCCCAAAGATAATAATGGAACCATGGATCTGTTCGGAGGTGCAGATGACATATCTTCAGGGAGTGA
T
GGAGAAGATAAGCCCCCAACTCCAGGACAGCCTGTGGATGAAAATGGCTTGCCCCAGGATCAGCAGGAG
GAA
GAGCCCATACCTGAGACCAGAATAGAAGTGGAGATCCCCAAAGTAAACACGGACTTGGGCAATGACT
TA
TATTTTGTTAAACTGCCCAACTTCCTCAGTGTAGAGCCCAGGCCTTTTGATCCTCAGTATTATGAAGA
T
GAATTTGAAGATGAGGAGATGCTGGATGAAGAGGGGAGAACCAGGTTAAAATTGAAGGTAGAAAACACT
ATA
AGATGGAGGATACGCAGAGATGAAGAAGGAAATGAAATTAAAGAAAGCAATGCGCGGATCGTCAAGT
GG
TCAGATGGAAGCATGTCCCTGCATTTAGGGAATGAAGTGTTTGATGTGTACAAAGCCCCACTGCAGGG
C
GACCACAACCATCTTTTCATAAGACAAGGTACTGGGCTGCAGGGGCAGGCCGTCTTTAAAACGAAGCTC
ACC
TTCAGGCCTCACTCTACAGACAGTGCCACACACAGGAAGATGACCCTGTCACTTGCAGATAGATGCT
CA
AAGACACAGAAGATTCGAATCTTACCAATGGCTGGCCGTGACCCTGAGTGCCAGCGCACAGAGATGAT
T
AAGAAAGAAGAAGAACGCCTGAGGGCCTCCATCAGGAGGGAGTCTCAGCAGCGCCGGATGCGAGAGAAA
CAG
CACCAGCGGGGGCTGAGCGCCAGCTACCTGGAGCCTGATCGCTACGACGAGGAGGAGGAAGGCGAGG
AG
TCCGTCAGCCTGGCTGCCATTAAAAACCGCTACAAAGGGGGCATCCGCGAGGAACGAGCCAGAATCTA
C
TCCTCGGACAGTGATGAGGGCTCCGAAGAAGACAAAGCTCAAAGGTTACTCAAAGCAAAGAAGCTCAAC
AGT
GATGAGGAAGGTGAATCTTCTGGAAAGAGGAAAGCGGAAGACGATGACAAAGCGAATAAAAAGCATA
AG
AAGTATGTGATCAGTGATGAAGAAGAAGAAGAAGATGACTGA


Translation (667 aa):
MADMEDLFGSEAESEAERKDSESESDSDSDQDNGASGSNASGSESDQDDRGDSGQPSNKELFGDDSEEEG
A
SHHSGSDNHSERSDNRSEASERSDHEDNEPSDEDQHSGSEAHNDDDDEGHRSDEGSRHSEAEGSEKAQS
D
DEKWDGEDKSDQSDDEKLQNSDDEDREQGSDEDKLQNSDDDEEKMQNTDDEDRAQISDDDRQQLSEEEK
G
NSDDEHPVASDNDEEKQNSDDEDQPQVSDEEKMQNSDDERPQVSDEDGRRSDGEEEQDQKS
ESARGSDS
E
DEVLRLKRKNAIPSDSEADSDTEVPK
DNNGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQE
E
EPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEP
RPFDPQYYEDEFEDEEMLDEEGRTRLKLKVENT
I
RWRIRRDEEGNEIKESNARIVKWSDG
SMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQGQAVFKTKL
T
F
RPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASIRRESQQRRMREK
Q
HQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKGGIR
EERARIYSSDSDEGSEEDKAQRLLKAKKLN
S
DE
EGESSGKRKAEDDDKANKKHKKYVISDEEEEEDD



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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