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Report for CCDS23338.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23338.2 Public Mus musculus 9 Wdr72 23 108 98 CCDS HistoryNCBI Gene:546144Re-query CCDS DB by CCDS ID:23338.2Re-query CCDS DB by GeneID:546144See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23338.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055879.8 ENSMUSP00000057320.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055879.8Link to Ensembl Protein Viewer:ENSMUSP00000057320.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055879Re-query CCDS DB by Protein ID:ENSMUSP00000057320
Original member NCBI NM_001033500.3 NP_001028672.2 Updated not alive Link to Nucleotide Sequence:NM_001033500.3Link to Protein Sequence:NP_001028672.2Re-query CCDS DB by Nucleotide ID:NM_001033500Re-query CCDS DB by Protein ID:NP_001028672
Current member NCBI NM_001033500.4 NP_001028672.2 Accepted alive Link to Nucleotide Sequence:NM_001033500.4Link to Protein Sequence:NP_001028672.2Re-query CCDS DB by Nucleotide ID:NM_001033500Re-query CCDS DB by Protein ID:NP_001028672Link to BLAST:NP_001028672.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028672.2 1114 D3YYM4 1114 100% 0 0

Chromosomal Locations for CCDS 23338.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 74134428 74134580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74139627 74139733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74143488 74143566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74145028 74145202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74145932 74146008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74146932 74147051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74148202 74148383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74148721 74148817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74151581 74151722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74152406 74152654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74154919 74155139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74157254 74157449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74179514 74179716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74209973 74210787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74213281 74213372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74217240 74217319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74218577 74218772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74275936 74276040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74281668 74281723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3345 nt):
ATGAGGGGTGCTCTGCAGGCTGTGGCCCTCTGGGGAAGAAAAGCTCCTCCCCACAGCATCACGGCCATCA
TGATCACAGATGACCAGCAAACCATAGTGACTGGAAGTCAGGAGGGTCAGCTCTGCCTCTGGAGCCTCTC
ACCTGAACTGAAGATTTCAGCTAAAGAACTTCTTTTTGGTCATTCGGCTTCGGTGACATGTTTGGCAAGA
GCGAGAGACTTCTCCAAACAGCCTTACGTTGTGAGTGCTGCTGAGAATGGGGAGATGTGTATGTGGAATG
TGAGCAGCGGCCAGTGTGTGGAGAAGACCAGCCTTCCTTACAGGCACACAGCCATCTGTTACTACCACTG
CTCCTTCCGGATGACTGGAGAGGGCTGGCTGCTGTGCTGTGGGGAATATCAAGATGTTCTCGTCCTTGAT
GCTGGAACTCTGGCTGTCCTGCATACCTTCACCTCTTTACAGTCGCCCGACTGGATGAAATGCATGTGCA
TCGTTCACTCCGTGAGAATTCAAGAAGATTCTCTCTTGGTTGTGTCCATAACCGGCGAACTCAAAGTATG
GGACCTCTCCTCGTCCATCAACAGCATTCAGGAAAAGCAAGATGTCCATGAAAAAGAATCCAAGTTTCTT
GACTCCTTCAACTGTCAGACCATACGGTTTTGTCCGTACACGGAGAGACTCCTGTTGGTGGTGTTTTCTA
AGTGTTGGAAGATTTATGACTATTGTGACTTTTCCCTTCTGTGGACTGAAGTTAGTAGAGATGGACAATT
CTTTGCTGGTGGAGAGGTGCTTGCTGCCCACAGGATCCTTGTTTGGACAGAAGATGGTCACAGTTATATC
TATCAGCTGCTGAACAGGTGGGCTCAGATGGGAGCGACGCTCAGAACATTCAGTGGGCTTTCCAAATGCG
TGTGCCCTGCCGACGGAGGTGTCCTGAAGGGGACTGTCTACCCTCACTTACTCTGCTCCACTTCTGTGGA
GGAAAATAAGAGCCTGCATTTCGTCATGGGCTACATGAATGAACGGAAAGAGCCATTTTACAAGGTGCTT
TTCTCAGGAGAAGTCTCGGGGAGAATAACGTTGTGGCATATCCCAGATGTCCCCATATCTAAGTTTGACG
GTTCCCCTAGAGAAATACCAATAACTACCACCTGGACTCTTCAGGATAACTTCGATAAGCATCAAATGGT
GTCACAGAGCATCACAGACCATTTCTCTGGGTCCAGAGATGAGGTGGGAATGACAGCTACCATCACCTCA
TCAGAGTACATTCCAAATCTTGATAAACTCATCTGTGGCTGTGAGGATGGGACCATTTTCATCACTAAGG
CATTGAATGCTGCCAAAGCTGGACTTCTAGAAGGGGATTCTTTATTGAAAGATTCTCCGTGCCACACCCT
TCTCAGAGGCCATCACCAGAGTGTGACTTCATTACTTTACCCTCACAATCTTGCTTCAAAGTTAGACCAA
AGTTGGATGGTGTCTGGGGATCGAGGCTCCTATGTGATCCTCTGGGATATTTTTACTGAGGAAATTCTGC
ACACGTTCTTTTTGGAAGCTGGTCCAGTAACAAGACTATTGATGTCACCAGAGAACTTAAAGCGAAGTGA
TGGTCAGATCCTCTGCTGTGTGTGTGGTGACCATTCCGTGGCTCTCCTTCACCTGGAAGGGAGACGGTGC
CTCTTGCGTGCCCGGAAGCACCTTTTCCCTGTGAGGATGATCAGATGGCATCCAGTCGAGAACTTTCTCA
TTGTTGGTTGTACAGATGACTCGGTCTACATCTGGGAAATTGAAACAGGCACTTTGGAAAGGCATGAGAC
AGGAGAAAGAGCAAGGATTATTCTCAACTGTGGTGACGATGCTCAGCTCATTAGATCTGAGCCTACACTG
TCAGTGGCCTCTGAGACACATAAGCACAAAAGTATAGAGCAGAAGTCATCCAACTCCCACCAGCCTGGGC
CAGTACCCTGCCCCAGTGTGCAGCTGGAGTCTTCATGTAAGGTTGCTGATGCTTCATCGGTCCCAAGACC
TTTCAATGTCCTGCCTGTGAAAACAAAATGGAGTCACATTGGTTTCCATGTTCTCCTGTTTGATCTGGAA
AATCTTGTTGAACTACTGCTGCCCACTCCCCTAAGTGATGTTGACCCTTCTGGCTCATTCTATGGAGGTG
ACATCTTGAGGAGAGCCAAGAGCACAGTAGAGAAGAAGACCCTGACAATAAGAAGAAACAAAGCATCGTG
TAGCTCTCTCCAGACAGAGGCACAGGCCAAGCCCAGTGGGGACAGCCTGGTCCTTGGGGACAGCACCAGT
AAGTTCTCAGAGGAGAACAATGGTATTAAAAGACAGAAGAAAATGAAGAGCTCCAAAAAGGCGCATCCTA
AGCCACCCAGGAAGGTGGATGCCAGCCTCACAATAGACATGGCGAAATTGTTTCTGTCTTGTATTTTGCC
ATGGGGAGTGGATAAAGATTTGGACAGCCTCTGCACCAGGCATCTCAGTATCTTAAAGCTGCAGGGCCCC
GTGTCTTTGGGACTTGCCTCGAATGAAGACCTCTTCTCCCTGATGCTGCCTGGGTGGGATGCATGCAGTA
CTGAAATGAAGGAGTATTCAGGGGTAAATCTGTGCTCCAGAAAAGTTTTGGACTTGTCAAGTAAATACAC
AGCCACTCTTCTGCACCAGACTGGAATTCCCCGAGGCCTGGAAAGTCACTGTGACTCTGTGCAGCAATCA
GATGCTATTGTGTATTTACTGAGCAGACTCTTTTTAGTTAATAAGTTAGTTAACATGCCTTTGGATCTGG
CCTGTGAAATCGACAGACCCTTCAAAATGGAGACTGTACACAGCAAGGCAAGATTCCCTGGAAGTGACAT
CTTGAATATATCAAGCTTCTATGGTCACCCAAAAAATGGTGGAAATGAGTGTCGCGCACCTGAGGCTGAC
CTCTCACTTTTGAAGCTAATCTCGTGCTGGAGAGATCAGTCTGTCCAGGTAACTGAAGCAATACAAGCTG
TCCTCTTGGCTGAAGTTCAACAGCATATGAAGAGTCTGAGAAATACACCAGTCAGTAGTCAACCAGATCC
AGTGGCAGAGCATAGCATCTGTGAGAGGATGCAGATCTCAGCCAAGATGGAGTGGACTGAAGAATTAGAG
CTGCAATATGTGGGGAAGTCTTCACCTCTGAAAACTTCAGTCAGTCCGGTCAAGCATGGCAACGACTTGA
ACTCGGCAAACTTCCAAGATACAGAGGACATTCTTGACAGATGTGTCTTGGAAGAGTCGGAGAGTGCAGG
TCAGCCAAGGCATCGTCCATGGATAGCGAAGGTGTGCTCCTGCAGGATGTGCTAG

Translation (1114 aa):
MRGALQAVALWGRKAPPHSITAIMITDDQQTIVTGSQEGQLCLWSLSPELKISAKELLFGHSASVTCLAR
ARDFSKQPYVVSAAENGEMCMWNVSSGQCVEKTSLPYRHTAICYYHCSFRMTGEGWLLCCGEYQDVLVLD
AGTLAVLHTFTSLQSPDWMKCMCIVHSVRIQEDSLLVVSITGELKVWDLSSSINSIQEKQDVHEKESKFL
DSFNCQTIRFCPYTERLLLVVFSKCWKIYDYCDFSLLWTEVSRDGQFFAGGEVLAAHRILVWTEDGHSYI
YQLLNRWAQMGATLRTFSGLSKCVCPADGGVLKGTVYPHLLCSTSVEENKSLHFVMGYMNERKEPFYKVL
FSGEVSGRITLWHIPDVPISKFDGSPREIPITTTWTLQDNFDKHQMVSQSITDHFSGSRDEVGMTATITS
SEYIPNLDKLICGCEDGTIFITKALNAAKAGLLEGDSLLKDSPCHTLLRGHHQSVTSLLYPHNLASKLDQ
SWMVSGDRGSYVILWDIFTEEILHTFFLEAGPVTRLLMSPENLKRSDGQILCCVCGDHSVALLHLEGRRC
LLRARKHLFPVRMIRWHPVENFLIVGCTDDSVYIWEIETGTLERHETGERARIILNCGDDAQLIRSEPTL
SVASETHKHKSIEQKSSNSHQPGPVPCPSVQLESSCKVADASSVPRPFNVLPVKTKWSHIGFHVLLFDLE
NLVELLLPTPLSDVDPSGSFYGGDILRRAKSTVEKKTLTIRRNKASCSSLQTEAQAKPSGDSLVLGDSTS
KFSEENNGIKRQKKMKSSKKAHPKPPRKVDASLTIDMAKLFLSCILPWGVDKDLDSLCTRHLSILKLQGP
VSLGLASNEDLFSLMLPGWDACSTEMKEYSGVNLCSRKVLDLSSKYTATLLHQTGIPRGLESHCDSVQQS
DAIVYLLSRLFLVNKLVNMPLDLACEIDRPFKMETVHSKARFPGSDILNISSFYGHPKNGGNECRAPEAD
LSLLKLISCWRDQSVQVTEAIQAVLLAEVQQHMKSLRNTPVSSQPDPVAEHSICERMQISAKMEWTEELE
LQYVGKSSPLKTSVSPVKHGNDLNSANFQDTEDILDRCVLEESESAGQPRHRPWIAKVCSCRMC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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