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Report for CCDS22846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22846.1 Public Mus musculus 9 Or1m1 23 108 98 CCDS HistoryNCBI Gene:18322Re-query CCDS DB by CCDS ID:22846.1Re-query CCDS DB by GeneID:18322See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066997.3 ENSMUSP00000064189.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066997.3Link to Ensembl Protein Viewer:ENSMUSP00000064189.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000066997Re-query CCDS DB by Protein ID:ENSMUSP00000064189
Original member Current member EBI ENSMUST00000216754.2 ENSMUSP00000149702.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216754.2Link to Ensembl Protein Viewer:ENSMUSP00000149702.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216754Re-query CCDS DB by Protein ID:ENSMUSP00000149702
Original member Current member NCBI NM_146606.1 NP_666817.1 Accepted alive Link to Nucleotide Sequence:NM_146606.1Link to Protein Sequence:NP_666817.1Re-query CCDS DB by Nucleotide ID:NM_146606Re-query CCDS DB by Protein ID:NP_666817Link to BLAST:NP_666817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666817.1 313 Q8VFM9 313 100% 0 0

Chromosomal Locations for CCDS 22846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 18754692 18755633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAACCACAAAACCACACCAGTGCATCTGAATTCATCCTCTTGGGACTTTCAGAAAAGCCAGATCATG
ACCCTGTCCTCTTTTCTCTGTTCCTCTGCATGTACATGATCACAGTGGTGGGGAACTTGTTGATCATTCT
TGCCATCAGCTTTGACTCTCACCTCCATACCCCTATGTATTTCTTCCTGGCCAATCTCTCCTTGGTTGAT
TTCTGTCTGGCTACCAACACTGTCCCCAAGATGCTGGTGAATATTCAAACTAGGAACAAATCTATCTCTT
ATCCTTGTTGTCTGACCCAGATGTACTTTTTCCATTTTTTTGGCATCATGGACAGTGTCTTAATAGCTGT
GATGGCTTACGACCGGTTTGTGGCCATTTGTCACCCATTACATTATTCTACTATCATGAGTCCACGGCTC
TGTGGCCTGCTGGTTGGTGTCCCATGGGTATATTCCTGCTTCATCTCCCTCACTCACATCCTCCTCATGG
CCCGTCTGGTATTCTGTGGCAAAAATGAGCTCCCCCACTACTTCTGTGACCTCACCCCACTTCTCCGACT
TTCCTGCACAGACACAACAGTAAACAAGATCTTTGTGCTCATTGTGGCAGGAATGGTGATAGCCACACCT
TTTGTCTGCATCCTGGCCTCCTATGCTCGAATCATCGTGGCCATCATGAAGGTCCCCTCTGCAGGTGGCA
GAAAGAAAGCCTTTTCTACCTGTAGCTCCCACCTCTCTGTAGTAGCCCTTTTCTATGGTACCACCATTGG
AGTCTATCTGTGTCCTTCCTCTGTCCGCACAGCTGTGAAGGAGAAGGCTTCTGCAGTAATGTACACAGCA
GTCACCCCCATGCTGAACCCCTTTATCTATAGCCTGAGGAACAGAGACCTGAAGGGAGCCCTAAAGAAGA
TCATTAACCGAAAGATCAGCACATCCTCCTGA

Translation (313 aa):
MEPQNHTSASEFILLGLSEKPDHDPVLFSLFLCMYMITVVGNLLIILAISFDSHLHTPMYFFLANLSLVD
FCLATNTVPKMLVNIQTRNKSISYPCCLTQMYFFHFFGIMDSVLIAVMAYDRFVAICHPLHYSTIMSPRL
CGLLVGVPWVYSCFISLTHILLMARLVFCGKNELPHYFCDLTPLLRLSCTDTTVNKIFVLIVAGMVIATP
FVCILASYARIIVAIMKVPSAGGRKKAFSTCSSHLSVVALFYGTTIGVYLCPSSVRTAVKEKASAVMYTA
VTPMLNPFIYSLRNRDLKGALKKIINRKISTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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