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Report for CCDS22807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22807.1 Public Mus musculus 9 Mmp10 23 108 98 CCDS HistoryNCBI Gene:17384Re-query CCDS DB by CCDS ID:22807.1Re-query CCDS DB by GeneID:17384See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22807.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034488.3 ENSMUSP00000034488.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034488.3Link to Ensembl Protein Viewer:ENSMUSP00000034488.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034488Re-query CCDS DB by Protein ID:ENSMUSP00000034488
Original member Current member NCBI NM_019471.3 NP_062344.1 Accepted alive Link to Nucleotide Sequence:NM_019471.3Link to Protein Sequence:NP_062344.1Re-query CCDS DB by Nucleotide ID:NM_019471Re-query CCDS DB by Protein ID:NP_062344Link to BLAST:NP_062344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062344.1 476 O55123 476 100% 0 0

Chromosomal Locations for CCDS 22807.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7502394 7502498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7503146 7503390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7503481 7503629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7504061 7504186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7504832 7504996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7505527 7505668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7506457 7506590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7507247 7507406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7508101 7508204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7509891 7509991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGAGCCACTAGCCATCCTGGCACTGCTGAGCCTACCAATCTGCTCAGCGTATCCTCTGCATGGGGCAG
TGACACAAGGCCACCCAAGCATGGATCTTGCTCAGCAATACCTAGAAAAATACTACAACTTTAAAAAAAA
TGAGAAACAAATTTTCAAAAGAAAGGACAGTAGTCCTGTTGTCAAAAAAATTCAAGAAATGCAGAAGTTC
CTCGGGTTGGAGATGACAGGGAAGCTGGACTCCAACACTATGGAGCTGATGCACAAGCCCAGGTGTGGTG
TTCCTGATGTTGGTGGCTTCAGTACCTTCCCAGGTTCGCCAAAATGGAGGAAATCCCACATCACCTACAG
GATTGTGAATTATACACCAGATTTGCCAAGACAGAGTGTGGATTCTGCCATTGAGAAAGCTTTGAAGGTC
TGGGAGGAGGTGACCCCACTCACTTTCTCCAGGATCTCTGAAGGAGAGGCTGACATAATGATCTCCTTTG
CAGTTGGAGAACACGGAGACTTTTACCCTTTTGATGGGCCAGGACAGAGTCTGGCTCATGCCTACCCACC
TGGCCCTGGATTTTATGGAGATGTTCACTTCGATGATGATGAGAAATGGACACTTGCACCCTCAGGGACC
AACTTATTCCTGGTTGCAGCCCATGAACTTGGCCACTCCCTGGGTCTCTTTCATTCCGACAAGAAAGAAT
CTCTGATGTACCCAGTCTACAGGTTCTCCACAAGCCCAGCTAACTTCCACCTTTCTCAAGATGATATAGA
GGGCATTCAATCCCTGTATGGAGCCGGTCCCTCCTCCGATGCCACAGTGGTTCCTGTGTTGTCTGTCTCT
CCAAGACCTGAGACCCCAGACAAATGTGATCCTGCTTTGTCCTTTGATTCAGTCAGCACGCTGAGAGGGG
AAGTCCTATTCTTTAAAGACAGGTACTTCTGGCGCAGATCCCATTGGAATCCCGAGCCTGAATTTCATTT
GATATCAGCATTTTGGCCCACTCTTCCTTCAGACTTAGATGCTGCCTATGAGGCTCACAACACGGACAGT
GTTCTGATTTTTAAAGGAAGTCAGTTCTGGGCAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGG
GGATCCACACTCTCGGTTTTCCTCCCACCGTGAAGAAGATTGATGCAGCTGTTTTTGAAAAGGAGAAGAA
GAAAACGTACTTCTTTGTAGGGGACAAATACTGGAGATTTGATGAGACAAGACATGTTATGGATAAAGGC
TTCCCAAGACAGATAACAGATGATTTTCCAGGAATTGAGCCACAAGTTGATGCTGTGTTACACGAATTTG
GGTTTTTTTATTTCTTCCGAGGATCATCACAGTTCGAGTTTGACCCCAATGCCAGGACGGTGACACACAT
ACTGAAGAGCAACAGCTGGCTGCTGTGCTGA

Translation (476 aa):
MEPLAILALLSLPICSAYPLHGAVTQGHPSMDLAQQYLEKYYNFKKNEKQIFKRKDSSPVVKKIQEMQKF
LGLEMTGKLDSNTMELMHKPRCGVPDVGGFSTFPGSPKWRKSHITYRIVNYTPDLPRQSVDSAIEKALKV
WEEVTPLTFSRISEGEADIMISFAVGEHGDFYPFDGPGQSLAHAYPPGPGFYGDVHFDDDEKWTLAPSGT
NLFLVAAHELGHSLGLFHSDKKESLMYPVYRFSTSPANFHLSQDDIEGIQSLYGAGPSSDATVVPVLSVS
PRPETPDKCDPALSFDSVSTLRGEVLFFKDRYFWRRSHWNPEPEFHLISAFWPTLPSDLDAAYEAHNTDS
VLIFKGSQFWAVRGNEVQAGYPKGIHTLGFPPTVKKIDAAVFEKEKKKTYFFVGDKYWRFDETRHVMDKG
FPRQITDDFPGIEPQVDAVLHEFGFFYFFRGSSQFEFDPNARTVTHILKSNSWLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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