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Report for CCDS22696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22696.1 Public Mus musculus 8 Gcsh 23 108 98 CCDS HistoryNCBI Gene:68133Re-query CCDS DB by CCDS ID:22696.1Re-query CCDS DB by GeneID:68133See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040484.5 ENSMUSP00000037131.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040484.5Link to Ensembl Protein Viewer:ENSMUSP00000037131.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040484Re-query CCDS DB by Protein ID:ENSMUSP00000037131
Original member Current member NCBI NM_026572.4 NP_080848.1 Accepted alive Link to Nucleotide Sequence:NM_026572.4Link to Protein Sequence:NP_080848.1Re-query CCDS DB by Nucleotide ID:NM_026572Re-query CCDS DB by Protein ID:NP_080848Link to BLAST:NP_080848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080848.1 170 Q91WK5 170 100% 0 0

Chromosomal Locations for CCDS 22696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 116982629 116982726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116983808 116983939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116987313 116987376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116989124 116989203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 116993288 116993426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGTCGCTGCAAGTGTCGAGGAGCTTGCGGGTTGTGGCCTACAGCCTGCGCACCGCCCTGACCTTCTGCT
CGCCGCGGCCCTGTGTACCGAGCGCCGCCGCCGTCCGCTCACTGCGCACCGGATCTGCTTTGCTGTCGGT
GCGTAAATTCACAGAGAAACATGAGTGGATAACGACAGAGGAAGGTATTGGAACGGTGGGAATCAGCAAT
TTTGCACAGGAAGCGTTGGGAGATGTTGTTTACTGTAGTCTGCCTGAAGTTGGGACAAAATTGAAAAAAC
AAGAGGAGTTTGGTGCTTTGGAGAGTGTGAAGGCTGCCAGTGAACTCTACTCTCCTCTGTCAGGAGAGGT
AACCGAAGTCAATGAAGCTCTTGCCGAAAACCCAGGGCTTGTCAACAAATCCTGTTACGAAGATGGTTGG
CTGATCAAGATGACACTGAGTGACCCTTCAGAGATGGATGAATTGATGAGTGAAGAAGCATATGAGAAAT
ATGTGAAGTCCATTGAGGAGTGA

Translation (170 aa):
MSLQVSRSLRVVAYSLRTALTFCSPRPCVPSAAAVRSLRTGSALLSVRKFTEKHEWITTEEGIGTVGISN
FAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGW
LIKMTLSDPSEMDELMSEEAYEKYVKSIEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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