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Report for CCDS22649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22649.1 Public Mus musculus 8 Nob1 23 108 98 CCDS HistoryNCBI Gene:67619Re-query CCDS DB by CCDS ID:22649.1Re-query CCDS DB by GeneID:67619See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003946.8 ENSMUSP00000003946.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003946.8Link to Ensembl Protein Viewer:ENSMUSP00000003946.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003946Re-query CCDS DB by Protein ID:ENSMUSP00000003946
Original member Current member NCBI NM_026277.3 NP_080553.1 Accepted alive Link to Nucleotide Sequence:NM_026277.3Link to Protein Sequence:NP_080553.1Re-query CCDS DB by Nucleotide ID:NM_026277Re-query CCDS DB by Protein ID:NP_080553Link to BLAST:NP_080553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080553.1 403 Q8BW10 403 100% 0 0

Chromosomal Locations for CCDS 22649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 107412914 107413183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107416106 107416250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107416994 107417091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107418056 107418226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107418314 107418442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107418700 107418771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107421482 107421612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107424738 107424870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107424966 107425028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCGCCGGTGGAGCACGTTGTGGCTGATGCCGGAGCTTTCTTGAGGGACGCGCCTCTGCAGGACATCG
GGAAGAACATCTACACCATCCGGGAGGTGGTGCGAGAGATTCGCGACAAGGCCACGCGCAGGCGGCTGGC
AGTGCTGCCCTACCAGCTTCGGTTCAAGGAGCCTCTCCCAGAGTACGTGCGGCTGGTAACTGAGTTTTCC
AAGAAAACTGGGGACTACCCCAGCCTCTCTGCCACAGATATCCAGGTGCTGGCTCTGACTTACCAGCTGG
AAGCAGAATTTGTCGGGGTGTCTCATCTAAAAAAAGAACCAGAGAAGGCTAAAGTGAGCTCTTCAATTCA
GCACCCTGAAACTGCTCTGCACATTTCTGGCTTCCATCTGCCCTCCAAGTCTAAACCCTTACAAGAAGCA
GTGGATCGGGGCCACGCAGCTGATGGGCCCGAGAACCTGGAGTTCAGCTCCTTCATGTTCTGGAGGACCC
CGCTGCCTAACATTGACCGTGAGCTGCAGGAGCTGCTGATTGATGGAAGGGAGGAGGAAGAGGAGGAGGA
GGAGTGTGAAGACAGTGATGACGATGGTGGTGGGTGGATAACCCCCAGCAACATAAAGCAGATCCAGCAG
GAGTTGGAGCAGTGTGACACCCCAGAGGACGTGCAGGTTGGCTGTGTGACCACGGACTTCGCCATGCAGA
ATGTTCTACTTCAGATGGGGCTGCACGTGTTGGCGGTGAACGGCATGCTGGTCCGAGAGGCCCGGAGCTA
CATCCTGCGCTGTCATGGCTGTTTCAAGACGACATCGGACATGAACCGAGTGTTCTGTGGACATTGTGGG
AACAAGACCCTGAAGAAAGTGTCTGTGACTATCAATGACGATGGGACCTTGCACATGCATTTCTCCCGAA
ACCCGAAAGTTCTGAACCCACGAGGCCTCCGGTACTCACTACCCACTCCAAAAGGGGGCAAATACGCCAT
CAACCCCCATCTGACCGAGGATCAGCGCTTCCCCCAGCTGCGACTCTCCCAGAAGGCCAGGCAGAAGACC
GACGTGTTCGCCCCTGACTACATAGCCGGGGTTTCTCCCTTTGCAGAGAATGACATCTCCAGCCGCTCGG
CCATCCTGCAAGTCCGGGACGGCATGTTGGGAGCCGGGAGGAGACGCTTAAATCCCAATGCCTCCAGAAA
GAAGTTTGTAAAGAAAAGGTGA

Translation (403 aa):
MAPVEHVVADAGAFLRDAPLQDIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLPEYVRLVTEFS
KKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEPEKAKVSSSIQHPETALHISGFHLPSKSKPLQEA
VDRGHAADGPENLEFSSFMFWRTPLPNIDRELQELLIDGREEEEEEEECEDSDDDGGGWITPSNIKQIQQ
ELEQCDTPEDVQVGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCG
NKTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKT
DVFAPDYIAGVSPFAENDISSRSAILQVRDGMLGAGRRRLNPNASRKKFVKKR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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