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Report for CCDS22580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22580.1 Public Mus musculus 8 Terb1 23 108 98 CCDS HistoryNCBI Gene:320022Re-query CCDS DB by CCDS ID:22580.1Re-query CCDS DB by GeneID:320022See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064576.7 ENSMUSP00000067324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064576.7Link to Ensembl Protein Viewer:ENSMUSP00000067324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000064576Re-query CCDS DB by Protein ID:ENSMUSP00000067324
Original member Current member NCBI NM_180958.3 NP_851289.2 Accepted alive Link to Nucleotide Sequence:NM_180958.3Link to Protein Sequence:NP_851289.2Re-query CCDS DB by Nucleotide ID:NM_180958Re-query CCDS DB by Protein ID:NP_851289Link to BLAST:NP_851289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851289.2 768 Q8C0V1-1 768 100% 0 0

Chromosomal Locations for CCDS 22580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104447143 104447330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104447922 104448044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104451795 104451860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104452625 104452774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104468728 104468820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104469111 104469172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104472686 104473038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104482173 104482327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104484277 104484402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104485357 104485491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104488487 104488639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104494870 104494992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104495087 104495202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104495302 104495362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104496772 104496903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104497967 104498095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104498493 104498603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104507790 104507820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGGAAAGTGAGAAGCCAAAGAAAACACAAGAAATGAAGACTGACCTGAAGTTACTGTTGGAATGTCTGA
AG
TATCACATGGGCAACCCTTTGTCACAAAAGGAAGTTTTGATCACGATTCATTCAGTTTGTAAACAAAA
C
AGTGATGCAGGTATTTATTTCCGGGAAATTGGTGGTTTGATGTTTATAATAAACCTTGCAAAGTCAAGT
GAG
CAGAGCTTGGTAAAAGAAGCAGCCTTATACACATTAGGATCTATTGCAGAAGAAAATGTTTACTGTC
AG
CAATCTTTGTGTACTTCAGAATTATTTCAAGATTTAACCGGGCTCTTAACTAATGATGATTCAAACAC
A
AATTTGAAAAGAATGTCTGTCTATGTTCTTTTGGTTCTGGTTTCAAATAATAGAAATGGACAAACTCTT
GTG
AGAGAAGTGGGTTGTATTGAAGTTCTGTCACAGATGTTCAGGACAGTTCTTTCCAATTATGAGTTGA
AT
TTGTCAGATAATAGTGTTTTCCAGAGCTATCTGCTATGGTCGTCTGTGTGCAGTACTCTGTGTGTATG
T
GTCAACAATCCTCAAAATGATGAGAATCAAATGCTTTGTTGTTCACTTTTTCCATGTGTTAATGAATGG
CTA
ATGAACTGCATGAGACCTGAGGTAATTCGACCTATATGCTCATTTATTGGACTTACTCTTGCAAATA
AT
ACACACGCTCAGAACTGCTTTGTCTCTTCGGGTGGACTGGATGTTTTGTGTCAAGTTCTTGTGCAGCT
G
GAGTCTGATTCACACAATACTCTTTCCAGTGCTAAGCTTGCAGTCATAGTGACAAAGACCATGGATGCA
TGT
ATTACTGATAACTCAGCTGCTTTTACAGTGGTATTATCCAAGTACCACATTGTTTCTACACTTCTGG
CA
TTACTGCTTCATGAAAGTCTTGATTCAAGAGAAAAATTTAGCATCATACTTGCCATTGGTCACTGCAC
A
GAGGATTGTGAGAAAAATCAGTATGAACTTTTAAAAAACAATGGGCTTCCATTGATGATACAAGCCTTA
ACT
GAGTTTAAGAATGAAGACCTAAGCAAAGCTGCCACTTACGTGCTTCACAACTGCAAAAAAATTACTG
GG
AAATTATCTCTAAGTCTAGGACAGAATTCTTTTGGTGAAAATGAAATTGAACTAAAGGACATAAGCGA
A
AAAGAGACTCTTAGAGAGCACTGGAAGGCAGCAAAGGAAATTCTATGCAGAATAAAACAATTTGAAAAA
GGA
GGGAAAGAGGAGAAGCAACAAAACAGGAGTGGACACTATAAGGATAATACCCCATCTATGAAAGTAA
AC
ATACAGACCAATTTGAAACGTCTCTGTGCAGATAGTACTGGAGGTACCAGAGCAGAAGATAAGGATAT
A
AACCAGTCTAGAGAGCTTCGCAGCTATAAGCCCAGTGAAATCATGTCTAAAGCTTGTGCAAATGAAAAC
CAA
CTGACGACTCGGAAGAAGAACACAAATCCAGTTCATCCTTTCTGTAAGGAGAAAGGGCAGAGTAAGA
TT
GTACATGAAACCACTCCAAGCTGTGCTCAAAACTTAGACAAGGAAAAAACCTTTGACCAAAAGGATTC
T
GTTTCTCAATCGAGTGACCAGGTCCTTAAACATCTGCCTCATACTGTCAAAAATAGAAAGCAGGTACCA
GAA
ACAGATCCATTTACATTGTGTTTAGACATAATAGATAGAGAAGTTGGTATTCAAGCAACTGACAGCT
GT
TCCAGAATGTTAAAATATACGTGCTCAGGTTGCATAGTAGCAAGAAAACTCCTCAACAGCCGAAATTT
T
AGCAAGTTTTTGCACTCATGTGCATACCAGTGTGTTCACCATAAAGTCATTATGGAAGCTGAAGACAAA
TAT
AAAAATGAACTAAGGAAAACATTTATCTGTGCAAAAAAAATTTTGCTGACTCCCTGTAGAAGAAGAC
AA
CTTTGTAAAGAATCTACTGCCTCTGAAGAACTAAAAATTGTTCATCAAAAACCAGATAGTAAAAAACT
T
CCAGGTTTGGAGGCACAGGCCTTAAATACCAGCATTCCAGAGGCTATGGAAAGAAGATCACCAGTTCCA
GGC
CAGAGTGGACTACATAAAAAAAGAAGAATTCGTAAAGACTTTACCAAAGAAGAAGTAAATTATCTTT
TC
CATGGAGTTAAAACAATGGGAAATCATTGGAATTCAATTTTGTGGTCTTTCCCCTTTCAGAAAGGACG
A
AGGGCTGTAGACCTTGCTCACAAATACCACAGGCTGATCAAAGGCCCCAGCTGTGCAGCCCTGTGA


Translation (768 aa):
MESEKPKKTQEMKTDLKLLLECLKYHMGNPLSQKEVLITIHSVCKQNSDAGIYFREIGGLMFIINLAKSS
E
QSLVKEAALYTLGSIAEEN
VYCQQSLCTSELFQDLTGLLTNDDSNTNLKRMSVYVLLVLVSNNRNGQTL
V
REVGCIEVLSQMF
RTVLSNYELNLSDNSVFQSYLLWSSVCSTLCVCVNNPQNDENQMLCCSLFPCVNEW
L
MNCMRPEVIRPICSFIGLTLANN
THAQNCFVSSGGLDVLCQVLVQLESDSHNTLSSAKLAVIVTKTMDA
C
ITDN
SAAFTVVLSKYHIVSTLLALLLHESLDSREKFSIILAIGHCTEDCEKNQYELLKNNGLPLMIQAL
T
EFKNEDLSKAATYVLHNCKKI
TGKLSLSLGQNSFGENEIELKDISEKETLREHWKAAKEILCRIKQFEK
G
GKE
EKQQNRSGHYKDNTPSMKVNIQTNLKRLCADSTGGTRAEDKDINQSRELRSYKPSEIMSKACANEN
Q
LTTRKKNTNPVHPFCKEKGQSKIVHETTPSCAQNLDKEKTFDQKDSVSQS
SDQVLKHLPHTVKNRKQVP
E
T
DPFTLCLDIIDREVGIQATDSCSRMLKYTCSGCIVARKLLNSRNFSKFLHSCAYQCVHHKVIMEAEDK
Y
KNELRKTFICAK
KILLTPCRRRQLCKESTASEELKIVHQKPDSKKLPGLEAQALNTSIPEAMERRSPVP
G
QSGLH
KKRRIRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIKGPSCAAL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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