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Report for CCDS22567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22567.1 Public Mus musculus 8 Slc38a7 23 108 98 CCDS HistoryNCBI Gene:234595Re-query CCDS DB by CCDS ID:22567.1Re-query CCDS DB by GeneID:234595See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040481.3 ENSMUSP00000037023.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040481.3Link to Ensembl Protein Viewer:ENSMUSP00000037023.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040481Re-query CCDS DB by Protein ID:ENSMUSP00000037023
Original member Current member EBI ENSMUST00000212270.1 ENSMUSP00000148659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212270.1Link to Ensembl Protein Viewer:ENSMUSP00000148659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212270Re-query CCDS DB by Protein ID:ENSMUSP00000148659
Original member NCBI NM_172758.4 NP_766346.1 Updated not alive Link to Nucleotide Sequence:NM_172758.4Link to Protein Sequence:NP_766346.1Re-query CCDS DB by Nucleotide ID:NM_172758Re-query CCDS DB by Protein ID:NP_766346
Current member NCBI NM_172758.5 NP_766346.1 Accepted alive Link to Nucleotide Sequence:NM_172758.5Link to Protein Sequence:NP_766346.1Re-query CCDS DB by Nucleotide ID:NM_172758Re-query CCDS DB by Protein ID:NP_766346Link to BLAST:NP_766346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766346.1 463 Q8BWH0 463 100% 0 0

Chromosomal Locations for CCDS 22567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95837569 95837671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95840414 95840468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95841522 95841721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95842176 95842323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95843760 95843874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95844104 95844161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95844888 95844986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95845799 95845943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95846133 95846331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95848381 95848650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCCCAGGTCAGCATCAACAGTGACTACAGCGAGTGGGCTTCCAGCACTGATGCTGGGGAGCGGGCCC
GTTTGCTCCAAAGTCCCTGTGTGGATGTGGTACCTAAGAGTGAGGGGGAGGCGTCTCCTGGAGATCCAGA
CAGCGGCACCACTTCGACGCTTGGAGCCGTCTTCATCGTCGTCAATGCCTGCCTCGGTGCGGGTCTGCTC
AACTTCCCAGCAGCCTTCAGCACCGCTGGGGGCGTGGCAGCTGGCATCGCCCTGCAGATGGGCATGCTGG
TTTTTATCATCAGTGGGCTGGTCATTCTGGCCTACTGCTCTCAAGCCAGCAATGAGAGGACCTACCAGGA
GGTGGTGTGGGCCGTGTGTGGCAAGCTGACAGGTGTGCTGTGTGAGGTAGCCATTGCGGTCTATACCTTC
GGAACCTGCATCGCCTTCCTCATCATTATTGGGGACCAGCAGGACAAGATTATAGCTGTGATGTCGAAGG
AGCCGGATGGGGCCAGCGGCAGCCCCTGGTACACAGACCGCAAGTTCACCATCAGTCTTACCGCCTTCCT
CTTCATCCTGCCCCTGTCCATCCCCAAGGAGATTGGCTTCCAGAAATATGCCAGCTTCCTGAGCGTCGTG
GGCACCTGGTACGTCACCGCCATTATAATCATCAAATACATCTGGCCAGATAAAGAGATGCGCCCGGGGG
ACATCTTGACTAGACCAGCGTCCTGGATGGCTGTGTTCAACGCCATGCCCACCATCTGCTTTGGATTTCA
GTGTCATGTGAGTAGTGTACCCGTCTTCAACAGCATGCGGCAGCCCGAAGTAAAGACCTGGGGCGGAGTG
GTGACGGCTGCCATGGTCATAGCTCTGGCTGTCTACATGGGCACAGGCATCTGTGGCTTCCTAACCTTTG
GAGCTGCTGTGGACCCCGACGTGCTCCGGTCCTACCCCTCAGAGGACGTGGCTGTGGCCGTTGCCCGAGC
CTTCATCATCCTGAGTGTGCTCACCTCCTATCCAATCTTGCACTTCTGTGGGCGGGCTGTGGTGGAAGGC
CTGTGGCTGCGCTACAAGGGGATGCCCGTGGAGGAGGATGTGGGCCGGGAGCGCCGGCGCCGGGTCCTGC
AGACGCTGGTGTGGTTCCTGCTGACCTTGCTACTGGCGCTCTTTATCCCTGACATTGGCAAGGTCATCTC
GGTCATCGGAGGCCTGGCAGCCTGCTTCATCTTCATCTTCCCAGGGCTGTGCCTCATTCAAGCCAAACTA
TCAGAGATGGAGGAGGTCAAACCTGCCAGCTGGTGGGCACTGGTCAGTTACGGAGTCCTTCTGGTCACAT
TGGGAGCCTTCATCTTCGGCCAGACCACAGCCAATGCCATTTTTGTGGATCTCTTGGCCTGA

Translation (463 aa):
MAQVSINSDYSEWASSTDAGERARLLQSPCVDVVPKSEGEASPGDPDSGTTSTLGAVFIVVNACLGAGLL
NFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIAVYTF
GTCIAFLIIIGDQQDKIIAVMSKEPDGASGSPWYTDRKFTISLTAFLFILPLSIPKEIGFQKYASFLSVV
GTWYVTAIIIIKYIWPDKEMRPGDILTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMRQPEVKTWGGV
VTAAMVIALAVYMGTGICGFLTFGAAVDPDVLRSYPSEDVAVAVARAFIILSVLTSYPILHFCGRAVVEG
LWLRYKGMPVEEDVGRERRRRVLQTLVWFLLTLLLALFIPDIGKVISVIGGLAACFIFIFPGLCLIQAKL
SEMEEVKPASWWALVSYGVLLVTLGAFIFGQTTANAIFVDLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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