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Report for CCDS22519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22519.1 Public Mus musculus 8 Aktip 23 108 98 CCDS HistoryNCBI Gene:14339Re-query CCDS DB by CCDS ID:22519.1Re-query CCDS DB by GeneID:14339See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109609.8 ENSMUSP00000105238.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109609.8Link to Ensembl Protein Viewer:ENSMUSP00000105238.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109609Re-query CCDS DB by Protein ID:ENSMUSP00000105238
Original member Current member EBI ENSMUST00000120213.8 ENSMUSP00000112375.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120213.8Link to Ensembl Protein Viewer:ENSMUSP00000112375.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120213Re-query CCDS DB by Protein ID:ENSMUSP00000112375
Original member Current member EBI ENSMUST00000120349.7 ENSMUSP00000113769.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120349.7Link to Ensembl Protein Viewer:ENSMUSP00000113769.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120349Re-query CCDS DB by Protein ID:ENSMUSP00000113769
Original member Current member EBI ENSMUST00000125257.2 ENSMUSP00000119277.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125257.2Link to Ensembl Protein Viewer:ENSMUSP00000119277.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000125257Re-query CCDS DB by Protein ID:ENSMUSP00000119277
Original member Current member NCBI NM_001302266.1 NP_001289195.1 Accepted alive Link to Nucleotide Sequence:NM_001302266.1Link to Protein Sequence:NP_001289195.1Re-query CCDS DB by Nucleotide ID:NM_001302266Re-query CCDS DB by Protein ID:NP_001289195Link to BLAST:NP_001289195.1
Original member Current member NCBI NM_001302267.1 NP_001289196.1 Accepted alive Link to Nucleotide Sequence:NM_001302267.1Link to Protein Sequence:NP_001289196.1Re-query CCDS DB by Nucleotide ID:NM_001302267Re-query CCDS DB by Protein ID:NP_001289196Link to BLAST:NP_001289196.1
Original member Current member NCBI NM_001302268.1 NP_001289197.1 Accepted alive Link to Nucleotide Sequence:NM_001302268.1Link to Protein Sequence:NP_001289197.1Re-query CCDS DB by Nucleotide ID:NM_001302268Re-query CCDS DB by Protein ID:NP_001289197Link to BLAST:NP_001289197.1
Original member Current member NCBI NM_001358937.1 NP_001345866.1 Accepted alive Link to Nucleotide Sequence:NM_001358937.1Link to Protein Sequence:NP_001345866.1Re-query CCDS DB by Nucleotide ID:NM_001358937Re-query CCDS DB by Protein ID:NP_001345866Link to BLAST:NP_001345866.1
Original member Current member NCBI NM_001358938.1 NP_001345867.1 Accepted alive Link to Nucleotide Sequence:NM_001358938.1Link to Protein Sequence:NP_001345867.1Re-query CCDS DB by Nucleotide ID:NM_001358938Re-query CCDS DB by Protein ID:NP_001345867Link to BLAST:NP_001345867.1
Original member Current member NCBI NM_010241.5 NP_034371.1 Accepted alive Link to Nucleotide Sequence:NM_010241.5Link to Protein Sequence:NP_034371.1Re-query CCDS DB by Nucleotide ID:NM_010241Re-query CCDS DB by Protein ID:NP_034371Link to BLAST:NP_034371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289195.1 292 Q64362 292 100% 0 0
NP_001289196.1 292 Q64362 292 100% 0 0
NP_001289197.1 292 Q64362 292 100% 0 0
NP_001345866.1 292 Q64362 292 100% 0 0
NP_001345867.1 292 Q64362 292 100% 0 0
NP_034371.1 292 Q64362 292 100% 0 0

Chromosomal Locations for CCDS 22519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91124571 91124678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91124823 91124883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91125817 91125924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91126025 91126123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91126198 91126286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91126674 91126774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91126865 91126929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91129600 91129805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91131041 91131082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGAACCCTTTGTGGAGCATGTCTGCAGGCTCTGTGCGCAAACGAGCTGAAGGTGAAGAGAAGACATTAG
CAGGAGATGTGAAAACCAGTCCTCCACGAAGTGCACCCAAAAAACAGCTACCTTCTATTCCCAAAAATGC
TCTACCCATAGCGAAGCCTACGTCTCCTGCCCCAGCAGCGCAGTCAACAAACGGCACCCATGCCTCTTAT
GGACCCTTCTACCTGGAATATTCGCTTCTTGCAGAATTTACTCTGGTAGTGAAGCAGAAGCTGCCAGGAG
TCTACGTACAGCCATCTTACCGCTCTGCATTAGTGTGGTTTGGAGTAATATTCATACGGCACGGGCTGTA
TCAGGATGGCGTATTCAAATTTACGGTGTATATTCCTGATAACTATCCTGATGGCGACTGTCCGCGCTTG
CTGTTTGATATTCCCGTCTTTCACCCACTAGTTGATCCCACCTCGGGTGAGCTGGATGTGAAAAGAGCGT
TCGCAAAGTGGAGGCGGAACCATAACCATATATGGCAGGTGTTAATGTATGCGAGGAGAGTCTTCTACAA
GATCGACACGACGAGCCCCCTGAACCCAGAGGCCGCAGTGCTGTATGAAAAAGACATTCAACTTTTTAAA
AGTAAAGTGGTCGACAGTGTTAAAGTGTGTACTGCCCGTCTTTTTGACCAGCCCAAGATAGAAGACCCCT
ACGCCATTAGCTTTTCTCCGTGGAACCCTTCTGTACATGATGAGGCCAGAGAAAAGATGCTGACTCAGAA
GAAGCCTGATGAACAGCACAATAAAAGTGTTCATGTTGCTGGCCTGTCATGGGTAAAGCCTGGCTCAGTA
CAACCTTTCAGTAAAGAAGAGAAAACAGTAGCAACCTAA

Translation (292 aa):
MNPLWSMSAGSVRKRAEGEEKTLAGDVKTSPPRSAPKKQLPSIPKNALPIAKPTSPAPAAQSTNGTHASY
GPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALVWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGDCPRL
LFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMYARRVFYKIDTTSPLNPEAAVLYEKDIQLFK
SKVVDSVKVCTARLFDQPKIEDPYAISFSPWNPSVHDEAREKMLTQKKPDEQHNKSVHVAGLSWVKPGSV
QPFSKEEKTVAT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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