NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21546.1 Public Mus musculus 7 Or51e2 23 108 98 CCDS HistoryNCBI Gene:170639Re-query CCDS DB by CCDS ID:21546.1Re-query CCDS DB by GeneID:170639See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060187.14 ENSMUSP00000058085.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060187.14Link to Ensembl Protein Viewer:ENSMUSP00000058085.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060187Re-query CCDS DB by Protein ID:ENSMUSP00000058085
Original member Current member EBI ENSMUST00000168007.2 ENSMUSP00000133255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168007.2Link to Ensembl Protein Viewer:ENSMUSP00000133255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168007Re-query CCDS DB by Protein ID:ENSMUSP00000133255
Original member Current member EBI ENSMUST00000217123.2 ENSMUSP00000149274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217123.2Link to Ensembl Protein Viewer:ENSMUSP00000149274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217123Re-query CCDS DB by Protein ID:ENSMUSP00000149274
Original member Current member NCBI NM_001168503.1 NP_001161975.1 Accepted alive Link to Nucleotide Sequence:NM_001168503.1Link to Protein Sequence:NP_001161975.1Re-query CCDS DB by Nucleotide ID:NM_001168503Re-query CCDS DB by Protein ID:NP_001161975Link to BLAST:NP_001161975.1
Original member Current member NCBI NM_130866.4 NP_570936.1 Accepted alive Link to Nucleotide Sequence:NM_130866.4Link to Protein Sequence:NP_570936.1Re-query CCDS DB by Nucleotide ID:NM_130866Re-query CCDS DB by Protein ID:NP_570936Link to BLAST:NP_570936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161975.1 320 Q8VBV9 320 100% 0 0
NP_570936.1 320 Q8VBV9 320 100% 0 0

Chromosomal Locations for CCDS 21546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102742039 102743001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGAGTTCCTGCAACTTCACCCATGCCACCTTCCTGCTTATTGGTATTCCAGGACTGGAGGAAGCTCACT
TT
TGGTTTGGCTTCCCCCTGCTTTCCATGTATGCTGTAGCATTGTTTGGAAACTGCATTGTGGTCTTCAT
A
GTGAGAACAGAGCGGAGCCTGCATGCACCCATGTACCTTTTTCTCTGCATGCTGGCAGCTATTGATCTG
GCT
TTGTCCACATCCACAATGCCCAAGATTCTCGCCCTCTTTTGGTTTGACTCCCGGGAGATTACTTTTG
AT
GCCTGTCTTGCCCAGATGTTTTTCATTCATACTCTCTCAGCAATTGAATCTACTATCCTGCTGGCCAT
G
GCCTTTGACCGGTACGTGGCTATCTGCCACCCACTGCGTCACGCTGCTGTCCTCAACAATACAGTAACA
GTC
CAAATAGGCATGGTGGCTCTGGTCCGGGGATCCCTATTCTTTTTCCCACTCCCACTACTGATCAAGC
GA
CTGGCTTTCTGTCACTCCAATGTGCTCTCCCACTCCTATTGTGTCCACCAGGATGTGATGAAGTTGGC
C
TATACAGACACATTACCCAATGTAGTCTATGGTCTAACTGCCATTCTGCTAGTCATGGGTGTAGATGTC
ATG
TTCATCTCCTTGTCCTACTTCCTGATCATACGAACGGTTCTGCAACTGCCTTCCAAGTCTGAGCGAG
CT
AAGGCATTTGGGACTTGTGTGTCACACATTAGTGTGGTCCTGGCTTTCTATGTACCACTCATTGGTCT
G
TCAGTGGTGCACCGTTTTGGAAACAGCCTGGATCCCATTGTGCATGTTCTAATGGGGGATGTCTACCTG
CTG
CTGCCTCCTGTGATCAATCCCATCATCTACGGTGCTAAGACCAAACAGATCAGAACACGGGTTCTGG
CT
ATGTTCAAGATCAGCTGTGACAAGGACATTGAAGCTGGGGGAAACACGTGA


Translation (320 aa):
MSSCNFTHATFLLIGIPGLEEAHFWFGFPLLSMYAVALFGNCIVVFIVRTERSLHAPMYLFLCMLAAIDL
A
LSTSTMPKILALFWFDSREITFDACLAQMFFIHTLSAIESTILLAMAFDRYVAICHPLRHAAVLNNTVT
V
QIGMVALVRGSLFFFPLPLLIKRLAFCHSNVLSHSYCVHQDVMKLAYTDTLPNVVYGLTAILLVMGVDV
M
FISLSYFLIIRTVLQLPSKSERAKAFGTCVSHISVVLAFYVPLIGLSVVHRFGNSLDPIVHVLMGDVYL
L
LPPVINPIIYGAKTKQIRTRVLAMFKISCDKDIEAGGNT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser