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Report for CCDS20784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20784.1 Public Mus musculus 7 Usp29 23 108 98 CCDS HistoryNCBI Gene:57775Re-query CCDS DB by CCDS ID:20784.1Re-query CCDS DB by GeneID:57775See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054055.6 ENSMUSP00000062349.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054055.6Link to Ensembl Protein Viewer:ENSMUSP00000062349.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054055Re-query CCDS DB by Protein ID:ENSMUSP00000062349
Original member Current member EBI ENSMUST00000198068.2 ENSMUSP00000143267.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198068.2Link to Ensembl Protein Viewer:ENSMUSP00000143267.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000198068Re-query CCDS DB by Protein ID:ENSMUSP00000143267
Original member Current member EBI ENSMUST00000200535.5 ENSMUSP00000143769.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200535.5Link to Ensembl Protein Viewer:ENSMUSP00000143769.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000200535Re-query CCDS DB by Protein ID:ENSMUSP00000143769
Original member Current member NCBI NM_001290994.1 NP_001277923.1 Accepted alive Link to Nucleotide Sequence:NM_001290994.1Link to Protein Sequence:NP_001277923.1Re-query CCDS DB by Nucleotide ID:NM_001290994Re-query CCDS DB by Protein ID:NP_001277923Link to BLAST:NP_001277923.1
Original member NCBI NM_001360501.1 NP_001347430.1 Updated not alive Link to Nucleotide Sequence:NM_001360501.1Link to Protein Sequence:NP_001347430.1Re-query CCDS DB by Nucleotide ID:NM_001360501Re-query CCDS DB by Protein ID:NP_001347430
Current member NCBI NM_001360501.2 NP_001347430.1 Accepted alive Link to Nucleotide Sequence:NM_001360501.2Link to Protein Sequence:NP_001347430.1Re-query CCDS DB by Nucleotide ID:NM_001360501Re-query CCDS DB by Protein ID:NP_001347430Link to BLAST:NP_001347430.1
Original member NCBI NM_001360502.1 NP_001347431.1 Updated not alive Link to Nucleotide Sequence:NM_001360502.1Link to Protein Sequence:NP_001347431.1Re-query CCDS DB by Nucleotide ID:NM_001360502Re-query CCDS DB by Protein ID:NP_001347431
Current member NCBI NM_001360502.2 NP_001347431.1 Accepted alive Link to Nucleotide Sequence:NM_001360502.2Link to Protein Sequence:NP_001347431.1Re-query CCDS DB by Nucleotide ID:NM_001360502Re-query CCDS DB by Protein ID:NP_001347431Link to BLAST:NP_001347431.1
Original member NCBI NM_021323.3 NP_067298.2 Updated not alive Link to Nucleotide Sequence:NM_021323.3Link to Protein Sequence:NP_067298.2Re-query CCDS DB by Nucleotide ID:NM_021323Re-query CCDS DB by Protein ID:NP_067298
Current member NCBI NM_021323.4 NP_067298.2 Accepted alive Link to Nucleotide Sequence:NM_021323.4Link to Protein Sequence:NP_067298.2Re-query CCDS DB by Nucleotide ID:NM_021323Re-query CCDS DB by Protein ID:NP_067298Link to BLAST:NP_067298.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277923.1 869 Q9ES63 869 100% 0 0
NP_001347430.1 869 Q9ES63 869 100% 0 0
NP_001347431.1 869 Q9ES63 869 100% 0 0
NP_067298.2 869 Q9ES63 869 100% 0 0

Chromosomal Locations for CCDS 20784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6961160 6963769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2610 nt):
ATGGCTCACCTAAAGATAAATGGTTTGGTCCAGATCCGCAGCACAAACAGGAGCAAGCACACCAGGGCAT
CTCAGTGGAAGGAAGCAGTCATCGAAATAGTAGAAAGAAAACAGAAAGTTAATCTGGTGGTTTCTTTCAA
GTTGGAAGAAAGGAGAAGGGTGTTTCAGCTGGGTGATAATGTTACAGGCGTAGTGGTTAGTGGTGAGCTG
GGACTGTATCATCTGGATTTAACTTTGAGAGACGACACATCCTTACTCATCGACAAGTTATCCTCTGCAG
ATGTTGAACATTTGAAGTCATTCCTGGATTCGTCTACTCCATGTGAGTCCCAGCAACCCATGGAGCCCAT
GAGTAGTCAGGATGACCTTGAAAGCAGTGATCCATTTTGCGGGGAGCACCAGGAGGCAGCCTGTGGATCC
CTGAATACCACTCCAGAAAGTGGGACACCACTGTCCCGCAAGATGCCACTTTCTATGTCAAACACCACGG
GCGGCCAAAAGAGAGGAGAAAAACAAGGCAGAAAGAGGAAGACAGAACCATCCTCCTCCAGCGCAGAAGT
GAACAAGGACATTCCCAAAGAAAATACTCCTGACCAAAAAAAGAAATCCAGGCGATATTATTCCAGGAAC
AGAGGCGGCAAAGCAGAGAAAGCTGTGACCTTAAGAGAACAAGAAAAGCGTAGCAATTGGAAACTTGAAC
CTGCTTTCAATTCCAAATCCTATGGAAGGGCTAACCTGGATGGCACTATCCTTCCAATCGCGACATGCTC
TGATGACAGAGATGTATCAATATTTGGACTGGAGATCATAACACATAATGGAGTCCAATCTCTTCCTGAC
CCTTACCTAAATCAACTAAAACGTGAAGGCTTCCCAAACTTGGGAAATACTTGTTACATGAATTCCATTT
TGCAATCTGTCTTTGGGATTCCAACCTTTGCAAAGGACTTACTCACTCAAGGCATCCCATGGGAGAAAGT
CTCCTACGATGACCTTATCATGCCCTTAAGCCAGCTCCTTGTCTTGAAAGACATTCGGGATGTAGAGATC
AAGGGGGAGTTACTCACCAGTGTAAAGAAGTCCATTTCCACAGTTGCAGACACATTCTCGGGCAATGAAC
AGAACGATGCCCATGAGTTTTTAAGTCTGTGTTTAGACCAGCTGAAACTGAACATGGAAAAAGTAAATGC
CATGTGGGATACTGAGAGGAGAAACACATGTGCTGGGTCTGCTGGCACCAAAAGGTTTGTTTGTCCCGTT
GGAGCTAATTTTGAATTTGAGCTGCATAGCTCCATCATCTGTGAAGGCTGTGGTGAGGCTACTATCAAAA
CCGAAGTGAGTAATTACCTCTCCATTGACCTGCACCATGGGACAAAAACACACCCTCTATCAATTCAAAA
GTCTTTTGATCTTTTCTTTACACCAGAAAAAATTGAGCATAACTGTGAGAAATGTAAGAACAAGAATTCT
GTTCTCAAGTACACATTGAGGAGACTCCCCAGGGTCCTCATTGTTCATCTGAAACGCTACCAAGTTACCA
CTGACTTGTTGCCAGTGAAGAGTGAGCAGCCAGTTGAGATTTCTAAGTATTTAAATATATCTTCCCACTG
CCATGAAAACAGGAAGCTACCATTTCCCTTGGCTAATACATCCCCAGATGTCTCTCAAGGGATGATGCCT
GGGATCTTCAACCAGTCAATGTTATCTAAGAAGGTGATTTCAGAATCCTGTGACCCCATGGTTCTACAGG
TTGGATCCAGTGTGGATGCTGAAATACAAAGCTTCCAGATAATGTATGAGGATGAAGATGCAAGTGAGGA
GCAGCAGCAGAGAGGCCTGGAAAGTGGCTCCATGCTGGAGCCAGAACTAGTGAAGACAGAAAACCGGATA
CTCAGACAAAAGACATCACTAGCAACTGACTCAATGATGGGTGACGGATACAGCTTCCTTCCTATGCTCT
GTGAGCCTCTGAGCATCCAAGATCCAGGTCTTGCAGAGATGGGTCTTCAAGAGGTTCCAGAGAATCCAGA
ATTTAAGAACTATGAGAAAATTAACATATATGGAAAGTCAGATGGCCGCACTAACACTGAGTTGTCAAAA
CTCTACCAGAATCATGGAAGTCGAATCAAGGGTTTGTTCCTACCGGCATCCCTTGCAAGTGTTAGTTCTC
AGGAAGACCCAGAGAAGGACCTGAGTAGGTCTCCAGAATTGCAGGAAGATGACCCACATTCCTTTGCATT
TGGTTCTGATGATTCCAAAGATGGGGAGATGGGAGATGATCTTCAGAATTACAGGCTCGTCAGTGTGGTC
AGCCACTTTGGGAGCTCCCCAAATTCAGGCCATTACGTAAGTGATGTGTATGACTTTCAAAAGCAAGCCT
GGCTCCTTTACAGTGATGTCCAAGTGTTCGAGAGTTCAGATCCCTCCATTCAGGAGAACAGGCTAAACAG
CGGATACATCTTCTTTTACATGCATAATGAGATTTTTGAGGAACTGTTGAAAAAGGCATCTGAGTGCAAG
GTCCTTAGCACATCTAAGGAGGAAAAGAGGGACATAGATTACTTCTCAACATTGCTTAACGGCCTTACAT
ACATCCTGGAAGAATTCTAA

Translation (869 aa):
MAHLKINGLVQIRSTNRSKHTRASQWKEAVIEIVERKQKVNLVVSFKLEERRRVFQLGDNVTGVVVSGEL
GLYHLDLTLRDDTSLLIDKLSSADVEHLKSFLDSSTPCESQQPMEPMSSQDDLESSDPFCGEHQEAACGS
LNTTPESGTPLSRKMPLSMSNTTGGQKRGEKQGRKRKTEPSSSSAEVNKDIPKENTPDQKKKSRRYYSRN
RGGKAEKAVTLREQEKRSNWKLEPAFNSKSYGRANLDGTILPIATCSDDRDVSIFGLEIITHNGVQSLPD
PYLNQLKREGFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGIPWEKVSYDDLIMPLSQLLVLKDIRDVEI
KGELLTSVKKSISTVADTFSGNEQNDAHEFLSLCLDQLKLNMEKVNAMWDTERRNTCAGSAGTKRFVCPV
GANFEFELHSSIICEGCGEATIKTEVSNYLSIDLHHGTKTHPLSIQKSFDLFFTPEKIEHNCEKCKNKNS
VLKYTLRRLPRVLIVHLKRYQVTTDLLPVKSEQPVEISKYLNISSHCHENRKLPFPLANTSPDVSQGMMP
GIFNQSMLSKKVISESCDPMVLQVGSSVDAEIQSFQIMYEDEDASEEQQQRGLESGSMLEPELVKTENRI
LRQKTSLATDSMMGDGYSFLPMLCEPLSIQDPGLAEMGLQEVPENPEFKNYEKINIYGKSDGRTNTELSK
LYQNHGSRIKGLFLPASLASVSSQEDPEKDLSRSPELQEDDPHSFAFGSDDSKDGEMGDDLQNYRLVSVV
SHFGSSPNSGHYVSDVYDFQKQAWLLYSDVQVFESSDPSIQENRLNSGYIFFYMHNEIFEELLKKASECK
VLSTSKEEKRDIDYFSTLLNGLTYILEEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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