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Report for CCDS20566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20566.1 Public Mus musculus 6 Cracr2a 23 108 98 CCDS HistoryNCBI Gene:381812Re-query CCDS DB by CCDS ID:20566.1Re-query CCDS DB by GeneID:381812See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071563.4 ENSMUSP00000071494.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071563.4Link to Ensembl Protein Viewer:ENSMUSP00000071494.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071563Re-query CCDS DB by Protein ID:ENSMUSP00000071494
Original member Current member NCBI NM_001033464.4 NP_001028636.1 Accepted alive Link to Nucleotide Sequence:NM_001033464.4Link to Protein Sequence:NP_001028636.1Re-query CCDS DB by Nucleotide ID:NM_001033464Re-query CCDS DB by Protein ID:NP_001028636Link to BLAST:NP_001028636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028636.1 310 Q3UP38-1 310 100% 0 0

Chromosomal Locations for CCDS 20566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127603863 127604072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127607190 127607301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127608563 127608746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127611386 127611532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127625835 127625925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127629739 127629927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCCACCCCCAGTGGAAGAGAAGACTCCAGCTCCCAGACACCAGGTCATGGGAAGCAGGGAAGTGGAG
CCTGCGTGGAGCAACTGGACCACCCGGAGAAGCTGGAGGTGGAGATGCCAGACCAGAGTGCCATGTGGAA
GAAAGCACAGGAATTCTTCCAGACCTGTGACTCCGAGGGCAAGGGCTTCATTGCCAGGACAGACATGCAG
AGGCTGCATCAGGAGTTGCCCCTAAGTCTAGAAGAATTGGAAGATGTGTTTGACGCCCTGGATGCTGATG
GCAATGGCTTTCTGACCCCAGAAGAGTTCACCACTGGATTTAGTCACTTCTTCTTCAGTCAAAATATCCA
AGGAGAGGAAGAAGCTGACCAGCAGGTGGCCCAGCTCCAAGAGGAGAAAGTGTATCAGTCTAGAGGGGAG
GAGGATGTGGGAGACATGGACCATGATGAAGAAGCACAATTTCAGATGCTGATGGACAGACTTGGAGCCC
AGAAAGTTCTGGAAGATGAAAGTGACGTCAGGCAGCTGTGGCTGCAGCTGAGGAAGGACGAGCCCCACCT
GCTGTCCAACTTCGAAGACCTCCTCACCACAATTTTTGCTCAGCTCCAAGAAGCCCATGAGCAGAAGAAC
GAACTGGAATGTGCCCTCAGAAAGAAAATTGCTGCTTACGATGAAGAAATCCAGCATCTCTATGAGGAGA
TGGAGCAGCAGATCAAAAGTGAGAGGGAGCAGTTCCTCCTGAAAGACACAGAGAGATTCCAGGCTCGCAG
CCGGGAGTTGGAAAAGAAGCTGAGCGCCAAGGAGCAGGAGCTGGAGCGACTCAATCAGAAGCAGAGGAAG
GTAGGCTACTGTGGAGACATCGTGGGCCCTCAGCTCTTCCAACTCAGCTTGCCTCTGCCTCACGCCCTCC
ACCATTCGTCCATGGATTTTTAA

Translation (310 aa):
MATPSGREDSSSQTPGHGKQGSGACVEQLDHPEKLEVEMPDQSAMWKKAQEFFQTCDSEGKGFIARTDMQ
RLHQELPLSLEELEDVFDALDADGNGFLTPEEFTTGFSHFFFSQNIQGEEEADQQVAQLQEEKVYQSRGE
EDVGDMDHDEEAQFQMLMDRLGAQKVLEDESDVRQLWLQLRKDEPHLLSNFEDLLTTIFAQLQEAHEQKN
ELECALRKKIAAYDEEIQHLYEEMEQQIKSEREQFLLKDTERFQARSRELEKKLSAKEQELERLNQKQRK
VGYCGDIVGPQLFQLSLPLPHALHHSSMDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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