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Report for CCDS20480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20480.1 Public Mus musculus 6 B4galnt3 23 108 98 CCDS HistoryNCBI Gene:330406Re-query CCDS DB by CCDS ID:20480.1Re-query CCDS DB by GeneID:330406See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057283.7 ENSMUSP00000058253.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057283.7Link to Ensembl Protein Viewer:ENSMUSP00000058253.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057283Re-query CCDS DB by Protein ID:ENSMUSP00000058253
Original member Current member NCBI NM_198884.2 NP_942585.1 Accepted alive Link to Nucleotide Sequence:NM_198884.2Link to Protein Sequence:NP_942585.1Re-query CCDS DB by Nucleotide ID:NM_198884Re-query CCDS DB by Protein ID:NP_942585Link to BLAST:NP_942585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942585.1 986 Q6L8S8 986 100% 0 0

Chromosomal Locations for CCDS 20480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120203810 120203918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120206479 120206605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120207123 120207276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120208906 120208978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120209233 120209386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120210092 120210408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120214747 120215503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120216274 120216335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120216556 120216656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120217456 120217565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120218868 120219011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120222064 120222130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120222273 120222351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120223601 120223668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120224076 120224176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120224545 120224635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120225093 120225188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120231514 120231591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120232888 120232991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120294391 120294559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2961 nt):
ATGGGGAGCCCCCGCGCCGCGTTGCTGATGCTGCTCCTGCGCCCGATCAAGCTGCTGAGGAGGCGCTTCC
GGCTGCTGCTGCTGCTCGCCGTAGTATCGGTGGGACTCTGGACTCTGTATCTGGAGCTGGTGGCGTCGGC
CCAGGCCGGCGGGAACCCCCTGAACCACAGGTATGGCAGCTGGCGAGAACTGGCCAAGGCCCTAGCCAGC
AGGAACATCCCAGCCGTTGATCCGAATCTCCAATTCTACCGTCCCCAGCGGCTGAGCCTCAAGGACCAAG
AAATTGCCCGAAGTAGGAGTAGGAACAGTAGCTACCTGAAGTGGAACAAGCCTGTCCCCTGGCTCTCAGA
GTTCCGGGGCCACGCCAACCTACATGTGTTTGAAGACTGGTGTGGCAGCTCCATCCAACAGCTGAGGAAC
AACCTGCACTTCCCACTCTACCCCCACATCCGCACAACTCTGAGGAAGCTGGCTGTGTCCCCCAAGTGGA
CCAACTATGGCCTCCGCATATTTGGCTATCTGCACCCTTTCACCGATGGGAAAATCCAGTTTGCCATCGC
TGCTGATGACAATGCTGAGTTCTGGCTGAGTCGTGATGACCAGGTCTCAGGCCTTCAGCTGCTGGCCAGC
GTGGGCAAGACAGGAAAGGAATGGACAGCCCCTGGAGAGTTTGGGAAATTTCAGAGTCAAATTTCCAAGC
CAGTGAGTTTATCAGCCTCCCTCAGGTACTACTTTGAGGTCCTGCACAAGCAAAATGATGAAGGCACTGA
CCACGTGGAGGTCGCGTGGAGACGGAATGACCCTGGAGCCAAGTTCACCATCATTGACTCCCCCTTCTTA
TCTCTCTTTACAAATGAGACCATCCTAAGGATGGATGAGGTGGGCCATATCCCACAGACAGCAGCCAGCC
ATGTAGGCTCCTCCAACACTCCTCCCCGGGATGAGCAGCCCCCAGCTGACATGCTGCGGCCTGACCCTCG
GGACACCCTCTTTCGAGTGCCTCTGATCGCCAAGTCCCATCTGCGCCACGTCCTGCCCGATTGTCCCTAC
AAACCCAGCTACCTGGTGGATGGACTCCCGCTACAGCGCTACCAGGGCCTCCGTTTTGTTCACCTGTCCT
TTGTTTATCCCAATGACTATACCCGTCTGAGCCACATGGAGACCCATAATAAATGTTTCTACCAAGAAAG
TGCCTATGACCAGGACAGGTCCAGCTTCCAGGAATATATCAAGATGGACAAGCCAGAGAAGCATGGCCCG
GAGCAGCCAGCAGGTTTGGAGGATGGCCTTCTAGAAGAATCCCAGTATGAAGACGTACCAGAGGAAATCC
CCACCTCTCAAGACCAGAATACTGGGATACAAGGGAGAAAACAGAAGACTATTTCCACCCCGGGGCTGGG
TGTCACTGACTACCACCTGCGGAAGCTCTTGGCTCGCTCACAGAGTGGCCCTGTAGCGCCTCTTTCCAAA
CAGAACTCTACAACTGCCTTTCCAACCAGGACAAGCAACATCCCAGTCCAGCGGCCAGAGAAAAGCCCTG
TGCCCAGCCGAGATTTGTCTCATTCTGACCAGGGGGCCCGGAGGAACCTGCCTCTCATCCAGAGAGCCAG
GCCCACTGGTGACAGACCTGGGAAGACTCTTGAGCAGTCCCAGTGGCTGAATCAAGTGGAATCCTTCATT
GCTGAGCAGAGAAGGGGAGACAGGATAGAGCCTCCAACCCCCAGCAGGGGCTGGCGTCCTGAGGAGGACG
TGGTGATAGCGGCGGACCAGGAAGGAGAAGTGGAGGAGGAGGAAGAGGGGGAAGATGAGGAAGAAGATAT
GAGTGAGGTGTTCGAATATGTGCCTATGTTTGACCCAGTGGTGAACTGGGGCCAGACCTTCAGCGCTCAG
AACCTCGACTTCCAAGCCCTGAGAACCGACTGGATCGACCTGAACTGTAACACATCGGGCAACCTGCTGC
TTCCGGAGCAGGAGGCCCTGGAGGTCACACGGGTCTTCCTGAGAAAGCTCAGCCAGAGGACCCGGGGGAG
ATACCAGCTGCAGCGCATTGTGAATGTGGAGAAGCGCCAGGACCGGCTGCGCGGGGGGCGCTACTTCCTG
GAGCTTGAACTGCTGGATGGCCAACGCCTGGTACGGCTCTCGGAGTACGTGTCCACTAGAGGCTGGCGGG
GAGGTGACCACCCAGGCAGGGAGGACACAGAAGCTCGGAACCTGCAGGGTCTGGTCTGGAGCCCACGCAA
CCGTCACAGACATGTCCTGAATGCCCAGGATCCAGAGCCCAAGCTCTGCTGGCCCCAAGGTTTCTCCTGG
AACCATCGAGCTGTGGTCCACTTTATTGTGCCTGTGAAGAACCAGGCTCGCTGGGTGCAGCAGTTCATCA
GAGATATGGAGAGCCTGTCCCAAGTCACTGGAGATGCACATTTCAGCATCATTATCACAGACTATAGCAG
TGAGGACATGGATGTGGAGATGGCTCTGAAGAGGTCCAGACTGCGGAGCTACCAGTACCTGAAGCTGAGT
GGAAACTTTGAGCGCTCTGCTGGACTGCAGGCTGGCATAGACCTGGTGAAGGATCCACACAGCATCATCT
TCCTCTGTGACCTGCACATCCACTTTCCAGCAGGAATCATTGATACCATCCGGAAGCACTGTGTGGAGGG
CAAGATGGCCTTTGCCCCCATGGTGATGCGGCTGCACTGTGGGGCCACCCCACAGTGGCCTGAGGGCTAC
TGGGAAGTAAATGGATTTGGACTGCTCGGGATCTACAAGTCTGACCTGGACAAGATCGGAGGCATGAACA
CCAAGGAGTTCAGAGACCGCTGGGGAGGGGAGGACTGGGAGCTGCTGGACAGGATTCTCCAAGCAGGCCT
GGAAGTGGAGCGGCTCTCCCTCAGGAACTTCTTCCATCACTTCCATTCCAAGCGAGGCATGTGGAACCGT
CGCCAAATGAAGATGCCGTGA

Translation (986 aa):
MGSPRAALLMLLLRPIKLLRRRFRLLLLLAVVSVGLWTLYLELVASAQAGGNPLNHRYGSWRELAKALAS
RNIPAVDPNLQFYRPQRLSLKDQEIARSRSRNSSYLKWNKPVPWLSEFRGHANLHVFEDWCGSSIQQLRN
NLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDGKIQFAIAADDNAEFWLSRDDQVSGLQLLAS
VGKTGKEWTAPGEFGKFQSQISKPVSLSASLRYYFEVLHKQNDEGTDHVEVAWRRNDPGAKFTIIDSPFL
SLFTNETILRMDEVGHIPQTAASHVGSSNTPPRDEQPPADMLRPDPRDTLFRVPLIAKSHLRHVLPDCPY
KPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHMETHNKCFYQESAYDQDRSSFQEYIKMDKPEKHGP
EQPAGLEDGLLEESQYEDVPEEIPTSQDQNTGIQGRKQKTISTPGLGVTDYHLRKLLARSQSGPVAPLSK
QNSTTAFPTRTSNIPVQRPEKSPVPSRDLSHSDQGARRNLPLIQRARPTGDRPGKTLEQSQWLNQVESFI
AEQRRGDRIEPPTPSRGWRPEEDVVIAADQEGEVEEEEEGEDEEEDMSEVFEYVPMFDPVVNWGQTFSAQ
NLDFQALRTDWIDLNCNTSGNLLLPEQEALEVTRVFLRKLSQRTRGRYQLQRIVNVEKRQDRLRGGRYFL
ELELLDGQRLVRLSEYVSTRGWRGGDHPGREDTEARNLQGLVWSPRNRHRHVLNAQDPEPKLCWPQGFSW
NHRAVVHFIVPVKNQARWVQQFIRDMESLSQVTGDAHFSIIITDYSSEDMDVEMALKRSRLRSYQYLKLS
GNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGIIDTIRKHCVEGKMAFAPMVMRLHCGATPQWPEGY
WEVNGFGLLGIYKSDLDKIGGMNTKEFRDRWGGEDWELLDRILQAGLEVERLSLRNFFHHFHSKRGMWNR
RQMKMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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