NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20323.1 Public Mus musculus 6 Prokr1 23 108 98 CCDS HistoryNCBI Gene:58182Re-query CCDS DB by CCDS ID:20323.1Re-query CCDS DB by GeneID:58182See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20323.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050887.8 ENSMUSP00000059034.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050887.8Link to Ensembl Protein Viewer:ENSMUSP00000059034.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050887Re-query CCDS DB by Protein ID:ENSMUSP00000059034
Original member Current member EBI ENSMUST00000204682.2 ENSMUSP00000144999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204682.2Link to Ensembl Protein Viewer:ENSMUSP00000144999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204682Re-query CCDS DB by Protein ID:ENSMUSP00000144999
Original member Current member NCBI NM_001355655.1 NP_001342584.1 Accepted alive Link to Nucleotide Sequence:NM_001355655.1Link to Protein Sequence:NP_001342584.1Re-query CCDS DB by Nucleotide ID:NM_001355655Re-query CCDS DB by Protein ID:NP_001342584Link to BLAST:NP_001342584.1
Original member Current member NCBI NM_021381.4 NP_067356.2 Accepted alive Link to Nucleotide Sequence:NM_021381.4Link to Protein Sequence:NP_067356.2Re-query CCDS DB by Nucleotide ID:NM_021381Re-query CCDS DB by Protein ID:NP_067356Link to BLAST:NP_067356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342584.1 393 Q9JKL1 393 100% 0 0
NP_067356.2 393 Q9JKL1 393 100% 0 0

Chromosomal Locations for CCDS 20323.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87581220 87581916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87588377 87588861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGAGACCACTGTCGGGGCTCTGGGTGAGAATACCACAGACACCTTCACCGACTTCTTTTCTGCACTCG
AT
GGCCATGAAGCCCAAACCGGCTCGTTACCATTCACTTTCAGCTACGGTGACTATGACATGCCCCTGGA
T
GAAGAGGAAGATGTGACCAATTCTCGGACTTTCTTTGCTGCCAAGATTGTCATTGGCATGGCTTTGGTG
GGT
ATCATGCTAGTGTGTGGCATCGGCAACTTCATCTTTATCACTGCCCTGGCCCGCTACAAAAAGCTCC
GC
AACCTCACCAACCTGCTTATCGCCAACCTGGCCATTTCAGACTTCCTCGTGGCCATCGTGTGCTGCCC
C
TTTGAGATGGACTACTATGTGGTGCGCCAGCTCTCCTGGGAGCATGGTCATGTCCTGTGCGCCTCTGTC
AAC
TACTTGCGTACCGTCTCCCTCTACGTCTCCACTAACGCCCTACTGGCCATTGCCATTGACAGGTATC
TG
GCCATTGTGCACCCGCTGAGACCGCGGATGAAGTGTCAAACAGCCGCCGGCCTGATCTTCCTGGTGTG
G
TCAGTATCCATCCTCATCGCCATTCCAGCTGCCTACTTCACCACTGAGACCGTGCTGGTCATCGTGGAG
AGA
CAGGAGAAGATCTTCTGTGGTCAGATCTGGCCGGTGGATCAGCAGTTCTACTACAGGTCCTATTTCC
TT
TTGGTTTTCGGCCTCGAGTTCGTGGGCCCTGTAGTCGCCATGACCTTGTGCTATGCCAGGGTGTCCCG
G
GAGCTCTGGTTCAAGGCGGTGCCAGGCTTCCAGACAGAGCAGATCCGCCGGAGGCTGCGCTGCCGCCGC
AGG
ACTGTGCTGGGGCTCGTGTGCGTCCTCTCTGCCTATGTGCTGTGCTGGGCTCCCTTCTATGGCTTCA
CT
ATCGTGCGTGACTTCTTCCCCTCCGTGTTTGTGAAGGAGAAGCACTACCTCACCGCCTTCTATGTGGT
G
GAGTGCATCGCCATGAGCAACAGCATGATCAATACGCTCTGCTTTGTGACTGTCAGGAATAACACCAGT
AAG
TACCTCAAGAGGATCCTGCGGCTTCAGTGGAGGGCCTCTCCCAGCGGGAGCAAGGCCAGCGCTGACC
TC
GACCTCAGGACCACGGGAATACCTGCCACCGAGGAGGTGGACTGCATCCGACTGAAATAA


Translation (393 aa):
METTVGALGENTTDTFTDFFSALDGHEAQTGSLPFTFSYGDYDMPLDEEEDVTNSRTFFAAKIVIGMALV
G
IMLVCGIGNFIFITALARYKKLRNLTNLLIANLAISDFLVAIVCCPFEMDYYVVRQLSWEHGHVLCASV
N
YLRTVSLYVSTNALLAIAID
RYLAIVHPLRPRMKCQTAAGLIFLVWSVSILIAIPAAYFTTETVLVIVE
R
QEKIFCGQIWPVDQQFYYRSYFLLVFGLEFVGPVVAMTLCYARVSRELWFKAVPGFQTEQIRRRLRCRR
R
TVLGLVCVLSAYVLCWAPFYGFTIVRDFFPSVFVKEKHYLTAFYVVECIAMSNSMINTLCFVTVRNNTS
K
YLKRILRLQWRASPSGSKASADLDLRTTGIPATEEVDCIRLK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser