CCDS Report for Consensus CDS

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Report for CCDS20263.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
20263.1	Public	Mus musculus	6	Hk2	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20263.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000000642.10	ENSMUSP00000000642.4	Accepted	alive
NCBI	NM_013820.3	NP_038848.1	Updated	not alive
NCBI	NM_013820.4	NP_038848.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_038848.1	917	O08528	917	100%	0	0

Chromosomal Locations for CCDS 20263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)

Genome Browser links:

Chromosome	Start	Stop
6	82727310	82727454
6	82728712	82728945
6	82729545	82729700
6	82730768	82730951
6	82731048	82731147
6	82732101	82732196
6	82734848	82734967
6	82735247	82735395
6	82736530	82736834
6	82738287	82738520
6	82739519	82739674
6	82742803	82742986
6	82743268	82743367
6	82743945	82744040
6	82744862	82744981
6	82749189	82749337
6	82760104	82760266
6	82773918	82773980

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGATCGCCTCGCATATGATCGCCTGCTTATTCACGGAGCTCAACCAAAACCAAGTGCAGAAGGTTGACC AGTATCTCTACCACATGCGTCTCTCAGATGAGACCCTTCTGGAGATTTCTAGGCGGTTCCGGAAGGAGAT GGAGAAGGGGCTAGGAGCTACCACACACCCTACAGCAGCTGTGAAGATGCTGCCCACCTTTGTGAGGTCA ACTCCGGATGGGACAGAACATGGCGAGTTCCTGGCTCTGGACCTTGGAGGAACCAACTTCCGTGTGCTCC GAGTAAGGGTGACAGACAATGGTCTCCAGAGGGTGGAGATGGAGAACCAGATCTACGCCATTCCCGAGGA CATCATGCGGGGCAGTGGAACCCAGCTGTTTGACCACATTGCCGAATGCCTGGCCAACTTCATGGACAAG CTACAGATCAAAGAGAAGAAGCTCCCGCTGGGTTTCACCTTCTCGTTCCCCTGCCACCAGACGAAACTGG ATGAGAGTTTCTTGGTCTCATGGACTAAGGGGTTCAAGTCCAGTGGCGTGGAAGGCAGAGATGTGGTGGA TCTGATCCGGAAGGCCATCCAGCGCAGAGGGGACTTTGACATTGACATTGTGGCTGTGGTGAATGACACG GTTGGGACCATGATGACTTGTGGTTATGATGATCAGAACTGCGAGATTGGTCTCATTGTGGGTACTGGCA GTAATGCCTGCTACATGGAGGAGATGCGTCACATTGACATGGTGGAGGGCGACGAGGGACGGATGTGCAT CAACATGGAGTGGGGGGCCTTTGGGGACGACGGTACACTCAATGACATCCGAACTGAGTTTGACAGAGAG ATCGACATGGGCTCACTGAACCCTGGGAAGCAGCTGTTTGAGAAGATGATCAGCGGGATGTACATGGGGG AGCTGGTCAGACTCATCCTGGTGAAGATGGCCAAGGCCGAGCTGCTGTTCCAAGGGAAACTCAGCCCAGA GCTCCTTACCACTGGCTCCTTCGAGACCAAAGATGTCTCGGATATTGAAGACGATAAGGACGGAATTCAG AAGGCCTACCAGATCCTGGTGCGCCTGGGTCTGAGCCCGCTGCAGGAGGACTGTGTGGCCACGCACCGAA TCTGCCAGATTGTGTCCACGCGCTCAGCCAGCCTGTGTGCAGCCACCCTGGCCGCGGTGCTGTGGCGGAT CAAAGAGAACAAGGGCGAGGAGCGACTCCGCTCCACCATCGGCGTGGATGGCTCTGTCTACAAGAAACAT CCCCATTTTGCCAAGCGTCTCCATAAGGCAGTGAGGAGGCTGGTGCCCGATTGTGATGTCCGCTTCCTCC GCTCTGAGGATGGCAGCGGCAAGGGGGCGGCTATGGTGACGGCGGTGGCTTACCGTCTGGCTGACCAACA CCGGGCCCGCCAGAAGACCCTGGAGTCTCTGAAGCTGAGCCATGAACAGCTGCTGGAGGTTAAGAGAAGG ATGAAGGTGGAAATGGAGCAGGGTCTGAGCAAGGAGACGCATGAGGCCGCCCCTGTGAAGATGTTGCCCA CTTATGTGTGTGCCACTCCAGACGGTACAGAGAAAGGAGACTTCCTGGCCTTGGATCTTGGAGGAACAAA CTTCCGGGTCCTGCTGGTGCGCGTGCGTAATGGCAAGCGAAGGGGCGTAGAGATGCATAACAAGATCTAC TCCATCCCACAGGAAGTCATGCATGGCACTGGAGAAGAGCTTTTCGACCACATTGTCCAGTGCATCGCGG ACTTCCTTGAGTACATGGGCATGAAGGGCGTGTCCCTACCTTTGGGTTTCACCTTCTCCTTCCCTTGCCA GCAGAACAGCCTGGACCAGAGCATCCTCCTCAAGTGGACAAAGGGATTCAAGGCATCCGGCTGCGAGGGT GAAGATGTGGTCACCTTGCTGAAGGAAGCCATTCGCCGGCGAGAGGAGTTTGACCTGGATGTGGTGGCCG TGGTAAATGACACAGTTGGGACTATGATGACTTGTGGCTATGAAGACCCTCACTGTGAAGTTGGCCTCAT TGTTGGCACTGGAAGCAATGCCTGCTACATGGAGGAGATGCGTAATGTGGAACTGGTGGACGGAGAGGAG GGGCGGATGTGTGTCAACATGGAGTGGGGAGCGTTCGGGGACAACGGCTGCCTGGATGACCTGCGCACAG TGTTTGACGTCGCTGTGGACGAGCTCTCTCTCAACCCTGGCAAACAGAGGTTTGAGAAGATGATCAGCGG CATGTACTTGGGCGAGATTGTGCGCAACATCCTGATCGATTTCACAAAGCGGGGGCTGCTCTTCCGTGGC CGCATCTCAGAGCGCCTCAAGACAAGGGGAATCTTCGAAACTAAGTTCCTGTCTCAGATCGAGAGTGACT GCCTGGCCCTGCTACAGGTCCGAGCCATCTTGCGCCACCTAGGGCTGGAGAGCACGTGTGACGACAGCAT CATTGTGAAGGAGGTGTGCACTGTGGTCGCCCGGCGCGCGGCCCAGCTCTGTGGCGCAGGCATGGCCGCC GTGGTGGACAAGATAAGAGAGAACCGTGGACTGGACAACCTCAAAGTGACGGTGGGCGTGGACGGGACAC TGTACAAGCTTCATCCTCACTTTGCCAAAGTCATGCATGAGACGGTGAGAGATCTGGCTCCGAAATGTGA CGTGTCCTTCCTGGAATCCGAGGACGGCAGTGGGAAGGGAGCGGCTCTCATCACTGCTGTGGCCTGTCGC ATCCGGGAGGCCGGGCAGAGATAG
Translation (917 aa):
MIASHMIACLFTELNQNQVQKVDQYLYHMRLSDETLLEISRRFRKEMEKGLGATTHPTAAVKMLPTFVRS TPDGTEHGEFLALDLGGTNFRVLRVRVTDNGLQRVEMENQIYAIPEDIMRGSGTQLFDHIAECLANFMDK LQIKEKKLPLGFTFSFPCHQTKLDESFLVSWTKGFKSSGVEGRDVVDLIRKAIQRRGDFDIDIVAVVNDT VGTMMTCGYDDQNCEIGLIVGTGSNACYMEEMRHIDMVEGDEGRMCINMEWGAFGDDGTLNDIRTEFDRE IDMGSLNPGKQLFEKMISGMYMGELVRLILVKMAKAELLFQGKLSPELLTTGSFETKDVSDIEDDKDGIQ KAYQILVRLGLSPLQEDCVATHRICQIVSTRSASLCAATLAAVLWRIKENKGEERLRSTIGVDGSVYKKH PHFAKRLHKAVRRLVPDCDVRFLRSEDGSGKGAAMVTAVAYRLADQHRARQKTLESLKLSHEQLLEVKRR MKVEMEQGLSKETHEAAPVKMLPTYVCATPDGTEKGDFLALDLGGTNFRVLLVRVRNGKRRGVEMHNKIY SIPQEVMHGTGEELFDHIVQCIADFLEYMGMKGVSLPLGFTFSFPCQQNSLDQSILLKWTKGFKASGCEG EDVVTLLKEAIRRREEFDLDVVAVVNDTVGTMMTCGYEDPHCEVGLIVGTGSNACYMEEMRNVELVDGEE GRMCVNMEWGAFGDNGCLDDLRTVFDVAVDELSLNPGKQRFEKMISGMYLGEIVRNILIDFTKRGLLFRG RISERLKTRGIFETKFLSQIESDCLALLQVRAILRHLGLESTCDDSIIVKEVCTVVARRAAQLCGAGMAA VVDKIRENRGLDNLKVTVGVDGTLYKLHPHFAKVMHETVRDLAPKCDVSFLESEDGSGKGAALITAVACR IREAGQR

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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