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Report for CCDS20120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20120.1 Public Mus musculus 6 Aoc1l1 23 108 98 CCDS HistoryNCBI Gene:243376Re-query CCDS DB by CCDS ID:20120.1Re-query CCDS DB by GeneID:243376See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184917.5 ENSMUSP00000139012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184917.5Link to Ensembl Protein Viewer:ENSMUSP00000139012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184917Re-query CCDS DB by Protein ID:ENSMUSP00000139012
Original member Current member NCBI NM_001029987.2 NP_001025158.1 Accepted alive Link to Nucleotide Sequence:NM_001029987.2Link to Protein Sequence:NP_001025158.1Re-query CCDS DB by Nucleotide ID:NM_001029987Re-query CCDS DB by Protein ID:NP_001025158Link to BLAST:NP_001025158.1

Chromosomal Locations for CCDS 20120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48975143 48976703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48977491 48977773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48978072 48978204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48978435 48978629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGGGTTGGCACAAAGGAGCTTGGCACTGGGCTGCATGGCCATCGTGTTGGTTCTACAGGAGACCATGG
CAGAGTACCCCAGCTGGATGTTGAATGGCAAGGCCCAGGTGTTCTCAGACCTGAGCATCCAGGAGATGGA
GGCTGTGCACAGCTTCCTGATGGGCAGGACGGAGCTGGAGCTGCAGCCATCCGGCACACAGGCTTTGGAC
AAGAATTCTGTGTTCCTCATTGAGACTCTGCTGCCCAACAAGAAGGTGGTCCTAGAGTTTCTGAATAAAG
GAACCAGACCTCCTGTGCGGGAAGCCCGTGTCATCATTTTCTTTAGTGCCCAGGAGCACCCCAATGTCAC
CGAGTTTGCTGTAGGGCCCCTGCCACAGCCCATCTACATGAGAGAACTGTTCCCCAGGCCAGAGAAACAT
CGATCCTGGGCATCCAGACCCATGTCCAAAGCAGAGCAAAGCCTTCTCTACCACAAAATCAAGGAGGCCA
CCACACCCTTAAAGGGGTTTTTCCTTGACACCACTGGCTTCTCATTAGAGGACTGCAATGGCCAGTGTCT
GACCTTCACCCATGTGGCCCCCCATAGTGTGGAGTCTAGACATCGGGCCACCTGGTTCCTCTTGCAGCGC
ATTGTAAAAGATCGCCTGCTACAACCCACAGGTCTGGAGGTCCTTGTGGATCATGGGAGCACAGATATCC
GAGACTGGAGAGTAGAGCAGGTCTGGTATAATGGGAAGCTCTACAGCAGCCCAGAGGAACTGGCTCAGAA
ATATGCAGATGGAGAAGTGGACACGGTGGTCCTCAAGGACCTGCGTCCCAAGAACACAGAGCTGCCACAA
GTCTTTAACAAGCCTGGTGGGAAATTCGCAGCGCCCCTCAGAAAATCTGGGCCCCATGTGAAACAAGCCA
ATGATTCCAGATACCACCTAGAGGGTAACACTGTGATCTACAAAGACTGGAGTTTCTCCTTCCAGCTTCG
ACCATCTTCTGGGCTGCAGATATTGAATGTGCACTTCAGGAATGAGTATATAGCCTATGAGATTGGCGTG
CAAGGTGCTATGGCTGTGCATAGAGAAAAAACACCTGCAGGAGAACTGACCAAAACCATGGATCTAGGCT
GGAGCCTGGGCACTGTAACTCACGAGTTAGCCCCTGGCATCAACTGTCCAGAGACAGCCACCTTCCTAGA
CGTCATCCACTACCATGGCACTGATGGGCCTGTCCGTTATCCACGAGCCCTCTGCCTCTTTGAGATACCC
ACAGGGGTGCCTGTTAGGCCTACCTTTAACACCAACTCTGCAGGCAAAATCAACTTCTTTTCAGATGTGA
TGGGACACAAACTGGTGCTACGGGCAACCTCAGCGCTCTACAATTTTGATTACATCTGGGACTTCATCTT
CTATACTACGGGCACGATCTCAGCCAAGATGCATGCCACAGGTTACATCCACACCACCATCTATACCCGT
GAAGGATTGAGAGAAACTCACCTGCTGACTCACCAGCTTGGCCACAGCCACACCCACCTTGTGCATTACC
GTGTTGACCTGGATGTGGCAGGCACCAACAACAGCTTCCACACACTGCAGGCCAAGCAGAAAAACACCAC
CAACTCCAGCAGCCCAAGACGCCTGGTACAGGACGTGATGGAGAAGACACAGTATTCCCAGGAGCGCCAG
GCCACCTTCTCCTTTGGACAAACTCTGCCTTCATTCCTGCTCTTTAGCAGCCCCAAAAAGGACATCTGGG
GATACCGGCGCAGCTATCGCTTAAAGATCTACTCCACATCTGAGCAGAGGCTGACCCCTGAAACCCAAGA
GGACTTGGCTTTCAGCTGGGCCCGGTACTCCCTGGCAGTGAGCAAATACTCAGACTCTGAACAGTACAGC
ACCAGCATCTACAACCAGAATCACCCCTGGGATCCCCCTGTGGTCTTTGAGGATTTCCTTCAGGACAGTG
AGAATATTGAAGACCAGGATTTGGTGGCCTGGGTGACAGTAGGCTTCTCTCATGGGCCCCACTCTGAAGC
TGCTCCATATATGGCCTCGTCTAGGAACTTCGTAGGCTTTTTGCTCCTGCCTTTCAACTTCTTCTATATC
ACTGAAAAACATCCAGCTACAAGTGCCACAGATATATCTGACACTGGATCCCTGGGGGCAGGGTCTGCCT
GA

Translation (723 aa):
MGLAQRSLALGCMAIVLVLQETMAEYPSWMLNGKAQVFSDLSIQEMEAVHSFLMGRTELELQPSGTQALD
KNSVFLIETLLPNKKVVLEFLNKGTRPPVREARVIIFFSAQEHPNVTEFAVGPLPQPIYMRELFPRPEKH
RSWASRPMSKAEQSLLYHKIKEATTPLKGFFLDTTGFSLEDCNGQCLTFTHVAPHSVESRHRATWFLLQR
IVKDRLLQPTGLEVLVDHGSTDIRDWRVEQVWYNGKLYSSPEELAQKYADGEVDTVVLKDLRPKNTELPQ
VFNKPGGKFAAPLRKSGPHVKQANDSRYHLEGNTVIYKDWSFSFQLRPSSGLQILNVHFRNEYIAYEIGV
QGAMAVHREKTPAGELTKTMDLGWSLGTVTHELAPGINCPETATFLDVIHYHGTDGPVRYPRALCLFEIP
TGVPVRPTFNTNSAGKINFFSDVMGHKLVLRATSALYNFDYIWDFIFYTTGTISAKMHATGYIHTTIYTR
EGLRETHLLTHQLGHSHTHLVHYRVDLDVAGTNNSFHTLQAKQKNTTNSSSPRRLVQDVMEKTQYSQERQ
ATFSFGQTLPSFLLFSSPKKDIWGYRRSYRLKIYSTSEQRLTPETQEDLAFSWARYSLAVSKYSDSEQYS
TSIYNQNHPWDPPVVFEDFLQDSENIEDQDLVAWVTVGFSHGPHSEAAPYMASSRNFVGFLLLPFNFFYI
TEKHPATSATDISDTGSLGAGSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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