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Report for CCDS20095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20095.1 Public Mus musculus 6 Cul1 23 108 98 CCDS HistoryNCBI Gene:26965Re-query CCDS DB by CCDS ID:20095.1Re-query CCDS DB by GeneID:26965See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031697.8 ENSMUSP00000031697.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031697.8Link to Ensembl Protein Viewer:ENSMUSP00000031697.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031697Re-query CCDS DB by Protein ID:ENSMUSP00000031697
Original member NCBI NM_001355550.1 NP_001342479.1 Updated not alive Link to Nucleotide Sequence:NM_001355550.1Link to Protein Sequence:NP_001342479.1Re-query CCDS DB by Nucleotide ID:NM_001355550Re-query CCDS DB by Protein ID:NP_001342479
Current member NCBI NM_001355550.2 NP_001342479.1 Accepted alive Link to Nucleotide Sequence:NM_001355550.2Link to Protein Sequence:NP_001342479.1Re-query CCDS DB by Nucleotide ID:NM_001355550Re-query CCDS DB by Protein ID:NP_001342479Link to BLAST:NP_001342479.1
Original member NCBI NM_001355551.1 NP_001342480.1 Updated not alive Link to Nucleotide Sequence:NM_001355551.1Link to Protein Sequence:NP_001342480.1Re-query CCDS DB by Nucleotide ID:NM_001355551Re-query CCDS DB by Protein ID:NP_001342480
Current member NCBI NM_001355551.2 NP_001342480.1 Accepted alive Link to Nucleotide Sequence:NM_001355551.2Link to Protein Sequence:NP_001342480.1Re-query CCDS DB by Nucleotide ID:NM_001355551Re-query CCDS DB by Protein ID:NP_001342480Link to BLAST:NP_001342480.1
Original member NCBI NM_012042.4 NP_036172.1 Updated not alive Link to Nucleotide Sequence:NM_012042.4Link to Protein Sequence:NP_036172.1Re-query CCDS DB by Nucleotide ID:NM_012042Re-query CCDS DB by Protein ID:NP_036172
Current member NCBI NM_012042.5 NP_036172.1 Accepted alive Link to Nucleotide Sequence:NM_012042.5Link to Protein Sequence:NP_036172.1Re-query CCDS DB by Nucleotide ID:NM_012042Re-query CCDS DB by Protein ID:NP_036172Link to BLAST:NP_036172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342479.1 776 Q9WTX6 776 100% 0 0
NP_001342480.1 776 Q9WTX6 776 100% 0 0
NP_036172.1 776 Q9WTX6 776 100% 0 0

Chromosomal Locations for CCDS 20095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47484905 47485044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47495067 47495241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47497221 47497388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47501168 47501218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47501699 47501789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47502427 47502590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47508226 47508388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47508973 47509103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47514795 47514902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47514979 47515085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47516475 47516523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47517102 47517233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47518165 47518282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47519136 47519212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47519648 47519779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47520793 47520885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47523078 47523125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47523204 47523286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47523699 47523804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47524517 47524630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47525554 47525634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGTCATCAAACAGGAGTCAGAATCCTCATGGACTGAAGCAGATTGGTCTTGACCAGATCTGGGATGACC
TCAGAGCTGGAATTCAGCAGGTGTATACCAGACAAAGCATGGCAAAGTCCAGATACATGGAACTCTACAC
TCATGTTTATAACTACTGTACTAGTGTGCATCAGTCCAACCAAGCCCGGGGTGCTGGAGTCCCTCCTTCC
AAGTCAAAAAAGGGGCAGACTCCTGGGGGAGCTCAGTTTGTTGGCTTGGAGTTATACAAGCGATTGAAGG
AATTTTTGAAGAATTATTTGACAAATCTTCTTAAGGATGGAGAAGATTTAATGGATGAGAGTGTCCTGAA
GTTCTACACTCAGCAGTGGGAAGATTACCGATTCTCCAGCAAAGTGCTGAATGGAATCTGTGCCTACCTC
AATAGACATTGGGTTCGCCGTGAATGTGATGAAGGACGAAAAGGAATATATGAAATCTATTCACTTGCAT
TGGTGACATGGAGAGATTGTTTGTTCAGGCCATTGAATAAACAGGTAACAAATGCTGTTTTAAAGTTGAT
TGAAAAGGAAAGAAATGGAGAAACCATCAATACAAGACTGATTAGTGGAGTTGTACAATCTTATGTGGAA
TTGGGGCTGAATGAAGATGATGCATTTGCAAAGGGCCCTACGTTAACAGTGTATAAAGAATCCTTTGAAT
CTCAATTTTTGGCTGACACAGAGAGATTTTATACCAGAGAAAGTACTGAATTCTTACAGCAGAACCCAGT
TACTGAATATATGAAAAAGGCTGAAGCTCGTTTGCTTGAGGAACAGCGGAGAGTTCAGGTTTACCTCCAC
GAGAGCACACAAGATGAACTAGCACGGAAATGTGAGCAGGTCCTCATTGAAAAACACTTGGAAATTTTTC
ACACAGAGTTTCAGAATTTATTGGATGCTGACAAGAATGAAGATTTGGGCCGCATGTATAATCTTGTATC
TAGAATTCAGGATGGCCTAGGAGAATTGAAAAAACTACTAGAGACACATATTCATAATCAGGGTCTTGCA
GCAATTGAGAAGTGTGGAGAAGCTGCTCTAAATGACCCCAAGATGTATGTGCAGACAGTGCTGGATGTTC
ATAAAAAATACAATGCCCTGGTGATGTCAGCATTCAACAACGATGCTGGCTTCGTAGCTGCTCTTGATAA
GGCTTGTGGTCGCTTCATAAACAACAATGCGGTTACCAAAATGGCCCAGTCATCCAGTAAATCCCCTGAG
CTGCTTGCTCGGTACTGTGACTCCTTGCTGAAGAAAAGTTCCAAGAACCCAGAAGAGGCAGAACTAGAAG
ACACCCTCAATCAAGTGATGGTGGTCTTCAAGTACATCGAGGACAAAGATGTATTTCAGAAGTTCTATGC
AAAGATGCTTGCCAAGAGACTGGTACATCAAAACAGTGCGAGTGACGATGCTGAAGCAAGCATGATCTCC
AAGTTAAAGCAAGCTTGTGGTTTTGAGTACACTTCCAAACTTCAGCGAATGTTTCAAGACATTGGTGTAA
GCAAAGATCTGAATGAACAGTTCAAAAAACACCTGACGAATTCAGAACCGCTGGACTTGGACTTCAGTAT
TCAGGTCCTGAGTTCTGGATCGTGGCCCTTTCAGCAGTCTTGCACGTTTGCCTTGCCGTCAGAGTTGGAG
CGCAGTTATCAGCGATTTACAGCTTTCTACGCCAGCCGTCACAGTGGCAGAAAATTGACATGGTTGTATC
AACTGTCCAAAGGGGAACTAGTCACTAACTGCTTCAAAAACAGATACACTTTGCAGGCGTCCACATTTCA
GATGGCAATCCTGCTTCAGTATAACACAGAAGACGCCTATACTGTGCAGCAGTTGACTGACAGCACTCAG
ATTAAAATGGACATTTTGGCACAAGTCCTACAGATTTTACTGAAGTCGAAATTGCTGGTCTTAGAAGATG
AAAATGCCAATGTTGATGAGGTGGAATTGAAGCCAGACACCTTAATAAAGTTATATCTTGGTTATAAAAA
TAAGAAATTGAGGGTTAATATCAATGTACCAATGAAAACTGAACAGAAGCAGGAACAAGAAACTACACAC
AAAAATATAGAGGAAGACCGCAAACTACTGATTCAGGCGGCCATCGTGAGAATCATGAAAATGAGGAAGG
TCCTGAAACACCAGCAGTTACTTGGTGAAGTCCTCACTCAGCTCTCCTCCAGGTTCAAACCTCGGGTCCC
GGTGATCAAGAAATGCATTGATATTCTCATCGAAAAAGAATATTTGGAGCGAGTCGATGGTGAGAAGGAC
ACCTACAGTTACTTGGCTTAA

Translation (776 aa):
MSSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS
KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYL
NRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVE
LGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLH
ESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA
AIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPE
LLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMIS
KLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELE
RSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQ
IKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTH
KNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKD
TYSYLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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