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Report for CCDS19510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19510.1 Public Mus musculus 5 Pde6b 23 108 98 CCDS HistoryNCBI Gene:18587Re-query CCDS DB by CCDS ID:19510.1Re-query CCDS DB by GeneID:18587See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031456.7 ENSMUSP00000031456.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031456.7Link to Ensembl Protein Viewer:ENSMUSP00000031456.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031456Re-query CCDS DB by Protein ID:ENSMUSP00000031456
Original member Current member NCBI NM_008806.2 NP_032832.2 Accepted alive Link to Nucleotide Sequence:NM_008806.2Link to Protein Sequence:NP_032832.2Re-query CCDS DB by Nucleotide ID:NM_008806Re-query CCDS DB by Protein ID:NP_032832Link to BLAST:NP_032832.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032832.2 856 P23440-1 856 100% 0 0

Chromosomal Locations for CCDS 19510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108388440 108388907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108403320 108403472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108404078 108404167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108419470 108419610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108419698 108419772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108420285 108420349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108421217 108421283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108421488 108421535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108423008 108423157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108423440 108423583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108424297 108424362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108425233 108425379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108426454 108426561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108426798 108426907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108427107 108427194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108427594 108427694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108427797 108427904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108428180 108428243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108428457 108428531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108429106 108429189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108430550 108430706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108431503 108431564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGAGCCTCAGTGAGGAACAGGTACGCAGCTTCCTGGATGGGAACCCCACGTTTGCCCATCAATACTTTG
GGAAGAAGTTGAGCCCTGAAAATGTGGCAGGGGCCTGTGAAGATGGTTGGCTGGCGGACTGTGGCAGCCT
GCGAGAGCTGTGCCAGGTGGAAGAGAGTGCAGCACTTTTTGAACTGGTGCAGGACATGCAGGAGAGTGTC
AATATGGAACGTGTGGTCTTCAAGATCCTGCGGCGCCTCTGCACCATCCTGCATGCCGACCGCTGCAGCC
TCTTTATGTACCGCCAGCGCAATGGCATAGCTGAACTTGCTACGCGGCTCTTCAGCGTGCAGCCTGACAG
CCTTCTGGAGGATTGCCTGGTGCCCCCTGACTCTGAGATCGTCTTCCCCCTGGACATTGGGATTGTGGGC
CATGTGGCTCAGACCAAGAAGATGATAAACGTGCAGGATGTGGCAGAGTGTCCCCACTTCAGCTCATTCG
CCGATGAGCTCACCGACTATGTGACAAAGAACATTTTGTCCACACCAATCATGAATGGCAAAGATGTCGT
GGCTGTGATCATGGCAGTGAATAAACTGGATGGCCCATGCTTCACGAGTGAAGATGAAGATGTTTTCACG
AAGTACCTGAATTTTGCTACATTAAACCTGAAGATCTATCACCTAAGCTACCTCCACAACTGTGAGACAC
GCAGAGGCCAGGTGCTCCTCTGGTCAGCCAATAAGGTGTTTGAAGAGCTGACAGACATCGAAAGACAGTT
CCACAAGGCCTTCTATACTGTCCGGGCCTATCTAAACTGCGAACGGTATTCAGTGGGCCTCCTGGACATG
ACCAAGGAGAAGGAGTTCTTTGATGTGTGGCCTGTGCTGATGGGAGAAGCCCAGCCATACTCAGGCCCAC
GAACACCTGATGGCCGGGAAATTGTCTTCTACAAAGTCATCGATTATATCCTCCACGGCAAAGAAGACAT
CAAAGTCATTCCCACACCCCCGGCTGATCACTGGGCCCTGGCCAGTGGCCTTCCAACCTACGTAGCAGAA
AGTGGCTTTATCTGTAACATCATGAATGCTTCAGCTGATGAAATGTTCAACTTTCAGGAGGGGCCCCTGG
ATGATTCAGGATGGGTGATCAAGAATGTCCTCTCTATGCCCATTGTCAACAAGAAAGAGGAGATTGTGGG
GGTGGCAACCTTCTACAACAGGAAAGATGGAAAGCCCTTCGATGATCAAGATGAAGTCCTTATGGAGTCT
CTGACACAGTTCCTGGGGTGGTCAGTGCTGAACACAGACACCTATGACAAGATGAACAAGCTGGAGAACC
GTAAGGACATCGCCCAGGACATGGTTCTGTACCATGTGAGATGTGACAAAGATGAAATCCAGGAAATCCT
GCCAACAAGGGATCGCCTTGGGAAAGAGCCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTGAAG
GAAGAACTTCCAGGGCCGACCAAGTTTGACATCTATGAGTTCCACTTCTCTGATCTGGAGTGTACAGAGC
TGGAGCTAGTCAAATGTGGCATCCAGATGTACTATGAGCTGGGTGTAGTCCGAAAGTTCCAGATTCCCCA
GGAGGTCTTGGTGCGCTTTCTATTCTCTGTCAGCAAAGCCTATCGAAGAATCACCTACCACAACTGGCGC
CACGGCTTCAATGTAGCCCAGACCATGTTTACCCTACTCATGACAGGCAAACTGAAGAGCTATTACACTG
ACCTAGAGGCCTTCGCCATGGTTACAGCTGGCTTGTGCCACGACATCGACCACCGTGGCACCAACAACCT
GTACCAGATGAAATCGCAGAATCCTCTAGCCAAGTTACATGGCTCCTCAATTCTGGAAAGGCACCACCTG
GAATTTGGGAAGTTTCTGTTGGCAGAGGAGAGCCTGAACATCTATCAGAACCTGAACCGGCGGCAGCATG
AACATGTGATCCACCTCATGGACATTGCCATCATTGCCACCGACCTGGCCCTCTACTTCAAGAAGAGAAC
AATGTTCCAGAAGATTGTGGATGAGTCTAAGAACTATGAAGATAAGAAGAGTTGGGTTGAGTACTTATCC
TTAGAGACCACACGAAAGGAGATAGTCATGGCCATGATGATGACTGCATGTGACCTGTCTGCTATCACCA
AACCCTGGGAAGTCCAGAGCAAGGTTGCTCTTCTGGTGGCTGCTGAGTTCTGGGAACAGGGGGACTTGGA
GAGGACTGTCTTGGATCAACAGCCCATTCCCATGATGGACCGGAACAAAGCAGCTGAGCTCCCTAAGCTG
CAAGTTGGTTTCATTGACTTCGTATGTACTTTCGTATACAAGGAATTTTCTCGATTTCACGAAGAGATCC
TGCCCATGTTTGACCGACTGCAAAATAACAGAAAGGAGTGGAAAGCACTAGCTGACGAGTATGAGGCCAA
AGTCAAGGCCCTGGAGGAAGAAAAGAAGAAGGAAGAAGACAGAGTCGCAGCCAAGAAAGTGGGCACAGAA
GTTTGCAATGGTGGTCCAGCACCCAAGTCCTCGACCTGCTGTATCCTATAA

Translation (856 aa):
MSLSEEQVRSFLDGNPTFAHQYFGKKLSPENVAGACEDGWLADCGSLRELCQVEESAALFELVQDMQESV
NMERVVFKILRRLCTILHADRCSLFMYRQRNGIAELATRLFSVQPDSLLEDCLVPPDSEIVFPLDIGIVG
HVAQTKKMINVQDVAECPHFSSFADELTDYVTKNILSTPIMNGKDVVAVIMAVNKLDGPCFTSEDEDVFT
KYLNFATLNLKIYHLSYLHNCETRRGQVLLWSANKVFEELTDIERQFHKAFYTVRAYLNCERYSVGLLDM
TKEKEFFDVWPVLMGEAQPYSGPRTPDGREIVFYKVIDYILHGKEDIKVIPTPPADHWALASGLPTYVAE
SGFICNIMNASADEMFNFQEGPLDDSGWVIKNVLSMPIVNKKEEIVGVATFYNRKDGKPFDDQDEVLMES
LTQFLGWSVLNTDTYDKMNKLENRKDIAQDMVLYHVRCDKDEIQEILPTRDRLGKEPADCEEDELGKILK
EELPGPTKFDIYEFHFSDLECTELELVKCGIQMYYELGVVRKFQIPQEVLVRFLFSVSKAYRRITYHNWR
HGFNVAQTMFTLLMTGKLKSYYTDLEAFAMVTAGLCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHL
EFGKFLLAEESLNIYQNLNRRQHEHVIHLMDIAIIATDLALYFKKRTMFQKIVDESKNYEDKKSWVEYLS
LETTRKEIVMAMMMTACDLSAITKPWEVQSKVALLVAAEFWEQGDLERTVLDQQPIPMMDRNKAAELPKL
QVGFIDFVCTFVYKEFSRFHEEILPMFDRLQNNRKEWKALADEYEAKVKALEEEKKKEEDRVAAKKVGTE
VCNGGPAPKSSTCCIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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