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Report for CCDS1949.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1949.2 Public Homo sapiens 2 DQX1 24 110 108 CCDS HistoryNCBI Gene:165545Re-query CCDS DB by CCDS ID:1949.2Re-query CCDS DB by GeneID:165545See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1949.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393951.6 ENSP00000377523.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393951.6Link to Ensembl Protein Viewer:ENSP00000377523.2Re-query CCDS DB by Nucleotide ID:ENST00000393951Re-query CCDS DB by Protein ID:ENSP00000377523
Original member Current member EBI ENST00000404568.4 ENSP00000384621.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404568.4Link to Ensembl Protein Viewer:ENSP00000384621.3Re-query CCDS DB by Nucleotide ID:ENST00000404568Re-query CCDS DB by Protein ID:ENSP00000384621
Original member Current member NCBI NM_133637.3 NP_598376.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133637.3Link to Protein Sequence:NP_598376.2Re-query CCDS DB by Nucleotide ID:NM_133637Re-query CCDS DB by Protein ID:NP_598376Link to BLAST:NP_598376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598376.2 717 Q8TE96-1 717 100% 0 0

Chromosomal Locations for CCDS 1949.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74518446 74518602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74519040 74519230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74519556 74519746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74519915 74520034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74522580 74522771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74522856 74523014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74523119 74523218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74523310 74523537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74523923 74524307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74525009 74525202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74525493 74525729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGACCTCTCAGCCTCTCAGGCTAGCAGAAGAGTATGGCCCAAGTCCTGGGGAGTCTGAACTGGCTGTGA
ACCCCTTTGATGGGCTTCCCTTCTCTTCCCGCTACTATGAGCTGCTGAAGCAGCGCCAAGCCTTGCCCAT
CTGGGCTGCTCGCTTTACCTTCTTGGAGCAGTTGGAGAGTAACCCCACTGGAGTGGTGCTGGTGTCTGGG
GAGCCTGGTTCTGGCAAGAGCACCCAGATCCCTCAGTGGTGTGCAGAGTTTGCGCTGGCCAGAGGGTTCC
AGAAAGGACAGGTTACTGTTACTCAGCCCTACCCTCTTGCAGCCCGGAGCCTGGCTCTGCGGGTTGCTGA
TGAGATGGACCTGACCCTGGGTCATGAGGTTGGATACAGCATCCCCCAGGAGGACTGCACGGGGCCCAAC
ACCCTGCTCAGGTTCTGCTGGGACAGGCTGCTTCTGCAGGAGGTGGCCTCGACCCGAGGCACTGGAGCCT
GGGGCGTGCTGGTACTAGATGAGGCTCAGGAGCGGTCGGTGGCATCAGATTCACTCCAGGGGCTACTGCA
AGATGCCAGGCTGGAAAAACTTCCGGGGGACCTCAGAGTGGTTGTGGTTACTGACCCAGCCCTTGAACCT
AAGCTCCGAGCTTTCTGGGGCAATCCTCCTATTGTGCATATACCCAGAGAGCCTGGTGAGAGACCTTCCC
CCATCTACTGGGACACCATCCCACCTGATCGGGTGGAAGCTGCCTGCCAAGCAGTGCTTGAATTGTGTCG
GAAGGAGCTTCCAGGAGATGTGCTAGTGTTCCTGCCCAGTGAGGAGGAAATTTCCCTGTGCTGTGAATCC
TTGTCCAGGGAGGTAGAGTCCTTGCTTCTCCAAGGGCTTCCACCACGAGTACTGCCCCTTCACCCAGACT
GTGGACGAGCCGTTCAGGCTGTGTATGAGGACATGGATGCCCGAAAGGTTGTGGTCACTCACTGGCTGGC
TGACTTCTCCTTCTCCCTCCCTTCCATCCAACATGTCATCGACTCAGGACTGGAGCTCCGAAGTGTTTAC
AATCCTAGGATCCGAGCAGAATTCCAAGTGTTGAGGCCAATCAGCAAGTGTCAGGCAGAGGCAAGACGAT
TGCGAGCAAGAGGGTTCCCACCAGGATCCTGCCTCTGCCTGTATCCTAAGTCCTTCTTAGAACTAGAAGC
TCCACCATTGCCACAACCCAGGGTGTGTGAGGAGAATCTGAGCTCCCTGGTGTTACTACTAAAAAGGAGA
CAGATTGCAGAGCCAGGGGAGTGTCACTTCCTGGACCAGCCTGCTCCAGAAGCACTGATGCAAGCCCTGG
AAGATTTAGACTATCTGGCAGCCCTGGATGATGATGGGGACCTGTCAGATCTGGGTGTCATACTATCAGA
ATTCCCTCTGGCCCCTGAGCTGGCCAAAGCCCTGCTGGCCTCATGCGAGTTTGACTGTGTGGACGAGATG
CTCACCCTGGCTGCCATGCTCACAGCTGCCCCTGGGTTTACCCGTCCTCCACTCAGTGCAGAAGAAGCTG
CCCTGCGTCGGGCCCTGGAACACACGGATGGTGACCACAGTTCTCTGATCCAGGTGTATGAAGCCTTTAT
ACAAAGTGGAGCAGATGAGGCTTGGTGCCAGGCTCGAGGTCTGAATTGGGCAGCATTGTGCCAAGCCCAT
AAACTTCGGGGAGAACTCCTAGAACTCATGCAACGAATTGAACTTCCCTTGTCCCTACCAGCCTTTGGCT
CTGAGCAGAATCGCAGAGACCTTCAGAAAGCACTGGTGTCAGGATACTTTCTCAAGGTGGCCAGAGACAC
AGACGGGACTGGAAATTACCTTCTCCTAACCCATAAGCATGTGGCCCAGCTCTCCTCATACTGCTGCTAC
CGAAGCCGCAGAGCTCCTGCCAGACCCCCACCATGGGTGCTCTACCACAATTTCACCATATCCAAAGACA
ACTGCCTTTCCATTGTTTCTGAGATTCAACCACAGATGCTGGTGGAATTGGCCCCTCCATACTTCCTGAG
TAACTTGCCTCCCAGTGAGAGCAGAGACCTTCTGAACCAGCTAAGGGAAGGAATGGCAGATTCTACAGCA
GGGAGCAAATCATCCTCAGCCCAGGAGTTCAGAGATCCCTGTGTCCTGCAGTGA

Translation (717 aa):
MTSQPLRLAEEYGPSPGESELAVNPFDGLPFSSRYYELLKQRQALPIWAARFTFLEQLESNPTGVVLVSG
EPGSGKSTQIPQWCAEFALARGFQKGQVTVTQPYPLAARSLALRVADEMDLTLGHEVGYSIPQEDCTGPN
TLLRFCWDRLLLQEVASTRGTGAWGVLVLDEAQERSVASDSLQGLLQDARLEKLPGDLRVVVVTDPALEP
KLRAFWGNPPIVHIPREPGERPSPIYWDTIPPDRVEAACQAVLELCRKELPGDVLVFLPSEEEISLCCES
LSREVESLLLQGLPPRVLPLHPDCGRAVQAVYEDMDARKVVVTHWLADFSFSLPSIQHVIDSGLELRSVY
NPRIRAEFQVLRPISKCQAEARRLRARGFPPGSCLCLYPKSFLELEAPPLPQPRVCEENLSSLVLLLKRR
QIAEPGECHFLDQPAPEALMQALEDLDYLAALDDDGDLSDLGVILSEFPLAPELAKALLASCEFDCVDEM
LTLAAMLTAAPGFTRPPLSAEEAALRRALEHTDGDHSSLIQVYEAFIQSGADEAWCQARGLNWAALCQAH
KLRGELLELMQRIELPLSLPAFGSEQNRRDLQKALVSGYFLKVARDTDGTGNYLLLTHKHVAQLSSYCCY
RSRRAPARPPPWVLYHNFTISKDNCLSIVSEIQPQMLVELAPPYFLSNLPPSESRDLLNQLREGMADSTA
GSKSSSAQEFRDPCVLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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