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Report for CCDS19367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19367.1 Public Mus musculus 5 Paics 23 108 98 CCDS HistoryNCBI Gene:67054Re-query CCDS DB by CCDS ID:19367.1Re-query CCDS DB by GeneID:67054See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031160.15 ENSMUSP00000031160.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031160.15Link to Ensembl Protein Viewer:ENSMUSP00000031160.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031160Re-query CCDS DB by Protein ID:ENSMUSP00000031160
Original member Current member EBI ENSMUST00000117536.7 ENSMUSP00000112879.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117536.7Link to Ensembl Protein Viewer:ENSMUSP00000112879.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117536Re-query CCDS DB by Protein ID:ENSMUSP00000112879
Original member Current member EBI ENSMUST00000120912.7 ENSMUSP00000113483.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120912.7Link to Ensembl Protein Viewer:ENSMUSP00000113483.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120912Re-query CCDS DB by Protein ID:ENSMUSP00000113483
Original member Current member NCBI NM_001356971.1 NP_001343900.1 Accepted alive Link to Nucleotide Sequence:NM_001356971.1Link to Protein Sequence:NP_001343900.1Re-query CCDS DB by Nucleotide ID:NM_001356971Re-query CCDS DB by Protein ID:NP_001343900Link to BLAST:NP_001343900.1
Original member Current member NCBI NM_001356972.1 NP_001343901.1 Accepted alive Link to Nucleotide Sequence:NM_001356972.1Link to Protein Sequence:NP_001343901.1Re-query CCDS DB by Nucleotide ID:NM_001356972Re-query CCDS DB by Protein ID:NP_001343901Link to BLAST:NP_001343901.1
Original member Current member NCBI NM_001356973.1 NP_001343902.1 Accepted alive Link to Nucleotide Sequence:NM_001356973.1Link to Protein Sequence:NP_001343902.1Re-query CCDS DB by Nucleotide ID:NM_001356973Re-query CCDS DB by Protein ID:NP_001343902Link to BLAST:NP_001343902.1
Original member Current member NCBI NM_025939.3 NP_080215.1 Accepted alive Link to Nucleotide Sequence:NM_025939.3Link to Protein Sequence:NP_080215.1Re-query CCDS DB by Nucleotide ID:NM_025939Re-query CCDS DB by Protein ID:NP_080215Link to BLAST:NP_080215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343900.1 425 Q9DCL9 425 100% 0 0
NP_001343901.1 425 Q9DCL9 425 100% 0 0
NP_001343902.1 425 Q9DCL9 425 100% 0 0
NP_080215.1 425 Q9DCL9 425 100% 0 0

Chromosomal Locations for CCDS 19367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76951820 76951835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76956546 76956743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76959315 76959493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76961110 76961289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76961393 76961506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76962427 76962510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76964442 76964622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76966247 76966405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76966648 76966814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCGACAGCCGTAGTAGTGAACATCGGGAAGAAGCTCTACGAGGGTAAAACAAAAGAAGTCTATGAGT
TGTTAGACACCCCAGGCAGAGTCCTCCTGCAGTCCAAGGACCAGATCACAGCAGGGAATGCAGCTAGGAA
GAACCACCTGGAAGGCAAAGCCGCCATCTCCAACAAGATCACCAGCTGCATATTTCAGTTGTTACAGGAA
GCTGGTATAAAAACTGCTTTCACCAAGAAATGCGGGGAGACTGCTTTCATTGCACCCCAGTGTGAAATGA
TCCCCATTGAGTGGGTGTGCCGAAGAATAGCAACTGGGTCTTTCCTCAAAAGGAACCCTGGGGTACAGGA
GGGGTACAAGTTCTATCCACCCAAAGTGGAGATGTTCTTCAAGGACGATGCCAATAATGATCCACAGTGG
TCTGAGGAGCAACTCATTGCTGCAAAATTCTGTTTTGCTGGCCTTGTTATAGGGCAGACTGAAGTGGACA
TCATGAGTCATGCCACACAAGCTATTTTTGAAATTCTGGAGAAATCCTGGCTGCCCCAGGACTGTACGCT
GGTTGATATGAAGATTGAATTTGGTGTTGATGTAACCACCAAAGAGATTGTTCTTGCTGATGTCATTGAT
AATGATTCCTGGAGACTATGGCCATCGGGAGATCGGAGCCAGCAGAAGGACAAACAGTCTTACCGTGATC
TCAAAGAAGTAACTCCAGAAGGACTCCAGATGGTAAAGAAAAACTTTGAGTGGGTTGCAGACCGAGTGGA
GTTGCTTCTCAAGTCAGACAGTCAGTGCAGGGTGGTAGTGCTGATGGGCTCCACCTCTGACCTTGGTCAC
TGTGAGAAAATTAAGAAGGCTTGTGGAAATTTTGGGATTCCATGTGAACTTAGAGTAACATCTGCGCATA
AAGGACCAGATGAGACTTTGAGGATTAAAGCAGAATATGAAGGGGATGGCATACCTACTGTATTTGTCTC
TGTGGCGGGCAGAAGCAATGGTCTAGGCCCAGTGCTGTCTGGCAATACTGCATATCCGGTTATCAGCTGT
CCCCCGATCACACCAGACTGGGGCGCTCAGGATGTGTGGTCATCTCTTCGACTGCCCAGTGGTATTGGCT
GTTCAACTATACTTTCTCCAGAAGGATCAGCTCAGTTTGCTGCTCAGATATTTGGGTTAAACAATCATTT
GGTGTGGGCCAAACTTCGAGCGAGCATATTAAACACGTGGATATCCTTAAAGCAGGCTGATAAGAAGGTC
AGACAATGCAATTTGTAA

Translation (425 aa):
MATAVVVNIGKKLYEGKTKEVYELLDTPGRVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQE
AGIKTAFTKKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVQEGYKFYPPKVEMFFKDDANNDPQW
SEEQLIAAKFCFAGLVIGQTEVDIMSHATQAIFEILEKSWLPQDCTLVDMKIEFGVDVTTKEIVLADVID
NDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVADRVELLLKSDSQCRVVVLMGSTSDLGH
CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVSVAGRSNGLGPVLSGNTAYPVISC
PPITPDWGAQDVWSSLRLPSGIGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRASILNTWISLKQADKKV
RQCNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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