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Report for CCDS19185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19185.1 Public Mus musculus 5 Gpn1 23 108 98 CCDS HistoryNCBI Gene:74254Re-query CCDS DB by CCDS ID:19185.1Re-query CCDS DB by GeneID:74254See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076949.12 ENSMUSP00000076217.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076949.12Link to Ensembl Protein Viewer:ENSMUSP00000076217.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076949Re-query CCDS DB by Protein ID:ENSMUSP00000076217
Original member NCBI NM_133756.5 NP_598517.1 Updated not alive Link to Nucleotide Sequence:NM_133756.5Link to Protein Sequence:NP_598517.1Re-query CCDS DB by Nucleotide ID:NM_133756Re-query CCDS DB by Protein ID:NP_598517
Current member NCBI NM_133756.6 NP_598517.1 Accepted alive Link to Nucleotide Sequence:NM_133756.6Link to Protein Sequence:NP_598517.1Re-query CCDS DB by Nucleotide ID:NM_133756Re-query CCDS DB by Protein ID:NP_598517Link to BLAST:NP_598517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598517.1 372 Q8VCE2 372 100% 0 0

Chromosomal Locations for CCDS 19185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31494773 31494883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31495518 31495611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31497311 31497350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31498340 31498406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31499267 31499304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31500854 31500932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31501112 31501206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31503391 31503436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31503912 31504058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31504953 31505035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31506193 31506232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31507474 31507564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31509299 31509406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31510832 31510911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCGGCGCCCGTGGCTCCATCCGAACCCCAGGCTTCCCGGGCTCCTCAGCCCCCCGTGTGTCTGTTGG
TGTTGGGAATGGCGGGATCCGGGAAAACTACCTTTGTACAGAGGCTCACAGGACACCTGCACAACAAAGG
CTGTCCACCGTATGTAATCAACCTGGACCCAGCTGTGCATGAAGTCCCCTTTCCCGCCAATATTGATATC
CGAGACACAGTGAAATATAAAGAAGTCATGAAGCAATATGGACTTGGGCCAAACGGAGGTATAGTGACCT
CACTCAACCTCTTTGCTACCAGATTTGATCAGGTGATGAAATTTATTGAGAAGGCCCAGAACACATTCAG
ATATGTCTTGATTGACACACCTGGACAGATTGAAGTATTTACCTGGTCAGCTTCAGGGACAATCATCACT
GAGGCCCTGGCTTCCTCATTTCCAACAGTAGTCATCTATGTCATGGATACATCACGGAGCACTAACCCAG
TGACCTTCATGTCCAATATGCTTTACGCATGCAGCATCTTGTACAAAACCAAGCTGCCTTTCATTGTGGT
CATGAACAAAACCGACATCATTGACCACAGCTTTGCCGTGGAGTGGATGCAGGATTTTGAGGCTTTCCAG
GATGCCTTGAACCAAGAGACTACCTACGTCAGTAACCTGACTCGTTCCATGAGCCTGGTGTTGGATGAGT
TCTACAGCTCACTCAGGGTGGTGGGTGTGTCTGCTGTGGTGGGCACCGGCTTCGATGAACTCTGTACTCA
GGTCACCAGTGCTGCAGAGGAGTACGAAAGGGAATATCGTCCTGAATACGAGCGTCTGAAGAAATCACTG
GCAAATGCCCAGAGTAATCAGCAGAAGGAGCAACTGGAGCGTCTTCGGAAGGATATGGGCTCCGTAGCCC
TGGATCCAGAGGCCGGCAAAGGCAACGCATCTCCTGTGCTGGATCCTTCTGACTTGATCCTGACTCGAGG
AACCTTGGATGAGGAGGATGAAGAAGCTGACAGTGACACGGATGACATTGACCACAGAGTTACAGAGGAA
AGCCGTGAAGAGCCAGCATTTCAGAACTTCATGGAGGAGTCAATGGCACACTGGAAGAGGAACAAGTAG

Translation (372 aa):
MAAPVAPSEPQASRAPQPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANIDI
RDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTWSASGTIIT
EALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQ
DALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVVGTGFDELCTQVTSAAEEYEREYRPEYERLKKSL
ANAQSNQQKEQLERLRKDMGSVALDPEAGKGNASPVLDPSDLILTRGTLDEEDEEADSDTDDIDHRVTEE
SREEPAFQNFMEESMAHWKRNK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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