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Report for CCDS19085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19085.1 Public Mus musculus 5 Abcb1b 23 108 98 CCDS HistoryNCBI Gene:18669Re-query CCDS DB by CCDS ID:19085.1Re-query CCDS DB by GeneID:18669See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009058.9 ENSMUSP00000009058.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009058.9Link to Ensembl Protein Viewer:ENSMUSP00000009058.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000009058Re-query CCDS DB by Protein ID:ENSMUSP00000009058
Original member Current member NCBI NM_011075.2 NP_035205.1 Accepted alive Link to Nucleotide Sequence:NM_011075.2Link to Protein Sequence:NP_035205.1Re-query CCDS DB by Nucleotide ID:NM_011075Re-query CCDS DB by Protein ID:NP_035205Link to BLAST:NP_035205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035205.1 1276 P06795 1276 100% 0 0

Chromosomal Locations for CCDS 19085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 8798742 8798806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8805433 8805481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8806008 8806170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8810558 8810615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8812655 8812846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8813574 8813745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8814723 8814847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8821272 8821443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8823932 8824045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8824187 8824297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8824473 8824598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8824689 8824892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8825113 8825283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8825551 8825712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8827326 8827499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8827703 8827849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8828823 8828930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8832194 8832271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8835028 8835111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8837591 8837794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8845748 8845848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8849512 8849652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8851457 8851613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8853429 8853626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8861424 8861630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8864115 8864261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8865750 8865950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3831 nt):
ATGGAGTTTGAAGAGAACCTTAAGGGAAGAGCAGACAAGAACTTCTCGAAGATGGGCAAAAAGAGTAAAA
AG
GAGAAGAAAGAAAAGAAACCTGCTGTTGGCGTATTTGGGATGTTTCGCTATGCAGATTGGCTGGACAA
G
CTGTGCATGATTCTGGGAACTCTCGCTGCTATTATCCATGGAACATTACTTCCCCTCTTGATGCTGGTG
TTT
GGAAACATGACAGATAGTTTTACAAAAGCAGAAGCCAGTATTCTGCCAAGCATTACTAATCAAAGTG
GA
CCCAACAGTACTCTGATCATCAGCAACAGCAGTCTGGAGGAAGAGATGGCCATATACGCCTACTATTA
C
ACCGGGATTGGTGCTGGTGTGCTCATAGTTGCCTACATCCAGGTTTCACTTTGGTGCCTGGCAGCTGGA
AGA
CAGATACACAAGATTAGGCAGAAGTTTTTCCATGCTATAATGAATCAGGAGATAGGCTGGTTTGATG
TG
CATGATGTTGGGGAGCTCAACACCCGGCTCACAGATGATGTCTCCAAAATTAATGACGGAATTGGTGA
C
AAAATTGGGATGTTTTTTCAGTCCATAACCACATTTTTAGCCGGTTTTATCATAGGATTTATAAGTGGT
TGG
AAGCTAACCCTTGTCATTTTGGCTGTCAGCCCTCTTATTGGATTGTCATCTGCTTTGTGGGCAAAGG
TA
TTGACTTCATTTACTAATAAGGAACTCCAGGCTTATGCAAAAGCTGGAGCAGTTGCTGAAGAAGTCTT
A
GCAGCCATCAGAACTGTGATTGCCTTTGGAGGACAACAGAAGGAACTTGAAAGGTACAATAAAAATTTA
GAA
GAAGCTAAAAATGTTGGCATAAAGAAAGCTATCACAGCCAGCATTTCGATAGGCATTGCCTACCTGT
TG
GTCTATGCATCATATGCACTGGCATTCTGGTATGGGACATCCTTGGTCCTCTCAAATGAATATTCTAT
T
GGAGAAGTGCTTACTGTCTTCTTCTCTATTTTGTTGGGGACTTTTAGTATTGGACACTTGGCCCCAAAC
ATA
GAAGCCTTTGCAAACGCACGAGGGGCAGCCTTTGAAATCTTCAAGATAATTGATAACGAGCCAAGCA
TT
GACAGCTTCTCAACAAAGGGCTACAAACCAGACAGTATAATGGGAAACTTAGAGTTTAAAAATGTTCA
C
TTCAACTACCCATCGAGAAGCGAAGTTCAGATCTTGAAGGGCCTCAATCTGAAGGTGAAGAGCGGACAG
ACG
GTGGCCCTGGTTGGCAACAGTGGCTGTGGAAAAAGCACAACTGTCCAGCTGATGCAGAGGCTCTACG
AC
CCCCTGGAGGGCGTGGTCAGTATCGACGGACAAGACATCAGAACCATCAATGTGAGGTATCTGAGGGA
G
ATCATTGGTGTGGTGAGTCAGGAACCTGTGCTGTTTGCCACCACGATCGCCGAGAACATTCGCTATGGC
CGA
GAAGATGTCACCATGGATGAGATTGAGAAAGCTGTCAAGGAAGCCAATGCCTATGACTTCATCATGA
AA
CTGCCCCACCAATTTGACACCCTGGTTGGTGAGAGAGGGGCGCAGCTGAGTGGGGGACAGAAACAGAG
A
ATCGCCATTGCCCGGGCCCTGGTCCGCAATCCCAAGATCCTTTTGTTGGACGAGGCCACCTCAGCCCTG
GAT
ACAGAAAGTGAAGCTGTGGTGCAGGCCGCACTGGATAAGGCTAGAGAAGGCCGGACCACCATTGTGA
TA
GCTCATCGCTTGTCTACAGTTCGTAATGCTGACGTCATTGCTGGTTTTGATGGTGGTGTCATTGTGGA
G
CAAGGAAATCATGATGAGCTCATGAGAGAAAAGGGCATTTACTTCAAACTTGTCATGACACAGACTAGA
GGA
AATGAAATTGAACCAGGAAATAATGCTTATGGATCCCAGAGTGACACTGATGCTTCTGAACTGACTT
CA
GAAGAATCCAAATCACCTTTAATAAGGAGATCAATTTACAGAAGTGTCCACAGAAAGCAAGACCAAGA
G
AGAAGACTTAGTATGAAAGAGGCTGTGGATGAAGATGTGCCTCTGGTTTCCTTTTGGCGGATCCTAAAT
CTA
AATCTAAGTGAATGGCCTTATTTACTTGTTGGCGTACTTTGCGCTGTTATAAATGGGTGCATACAAC
CA
GTGTTTGCCATAGTATTTTCAAGGATTGTAGGGGTTTTTTCAAGAGATGATGACCATGAAACTAAACG
A
CAGAATTGTAATTTGTTTTCCCTGTTCTTTCTGGTTATGGGGCTGATTTCTTTTGTTACATATTTCTTT
CAG
GGCTTCACATTTGGCAAAGCCGGAGAGATCCTCACCAAGCGAGTCCGATACATGGTTTTCAAATCCA
TG
CTGAGACAGGATATAAGCTGGTTCGATGACCATAAGAACAGCACTGGCTCACTGACCACCAGGCTCGC
C
AGTGATGCTTCTAGTGTTAAAGGGGCGATGGGCGCCAGGCTTGCTGTAGTTACCCAGAATGTAGCAAAC
CTC
GGGACAGGAGTCATCCTCTCCTTAGTCTATGGCTGGCAGCTGACACTTCTACTTGTAGTAATTATAC
CG
CTCATTGTATTGGGCGGAATTATTGAAATGAAGCTGTTGTCTGGCCAAGCCTTGAAGGACAAGAAACA
G
CTTGAGATCTCTGGGAAGATTGCTACAGAAGCAATTGAAAACTTCCGCACTATTGTCTCTTTGACTCGG
GAG
CAGAAGTTTGAAACCATGTATGCCCAGAGCTTGCAGGTACCATACAGAAATGCGATGAAGAAAGCAC
AC
GTGTTTGGGATCACGTTCTCCTTCACCCAGGCCATGATGTATTTTTCTTATGCTGCTTGTTTCCGGTT
C
GGTGCCTACTTGGTGGCACAACAACTCATGACTTTTGAAAATGTTATGTTGGTATTTTCTGCTGTTGTC
TTT
GGTGCCATGGCAGCTGGGAATACTAGTTCATTTGCTCCTGACTATGCGAAAGCCAAAGTATCAGCAT
CT
CATATCATCAGGATCATTGAGAAAACCCCTGAGATTGACAGCTACAGCACAGAGGGCTTGAAGCCTAC
T
CTGTTAGAAGGAAATGTAAAATTTAATGGAGTCCAGTTTAACTATCCCACCCGACCCAACATCCCAGTG
CTT
CAGGGGCTGAGCCTCGAGGTGAAGAAGGGCCAGACGTTGGCCCTGGTGGGCAGCAGTGGCTGTGGGA
AG
AGCACAGTGGTCCAGCTGCTCGAGCGCTTCTACGACCCCATGGCTGGATCAGTGTTTCTAGATGGCAA
A
GAAATAAAGCAACTGAATGTCCAGTGGCTCCGAGCTCACCTTGGCATTGTGTCCCAGGAGCCCATTCTC
TTT
GACTGCAGCATTGCAGAGAACATCGCCTATGGAGACAACAGCCGGGCCGTGTCTCATGAGGAGATTG
TG
AGGGCAGCCAAGGAGGCCAACATCCACCAGTTCATCGACTCACTGCCTGATAAATACAACACCAGAGT
A
GGAGACAAAGGCACTCAGCTGTCGGGTGGGCAGAAGCAGCGCATCGCCATCGCACGTGCCCTCGTCAGA
CAG
CCTCACATTTTACTTCTGGACGAAGCAACATCAGCTCTGGATACAGAAAGTGAAAAGGTTGTCCAGG
AA
GCGCTGGACAAAGCCAGGGAAGGCCGCACCTGCATTGTGATCGCTCACCGCCTGTCCACCATCCAGAA
C
GCGGACTTGATCGTGGTGATTGAGAACGGCAAAGTCAAGGAGCACGGCACCCACCAGCAGCTGCTGGCG
CAG
AAGGGCATCTACTTCTCAATGGTCCAGGCTGGAGCAAAGCGCTCATGA


Translation (1276 aa):
MEFEENLKGRADKNFSKMGKKSKKEKKEKKPAVGVFGMFRYADWLDKLCMILGTLAAIIHGTLLPLLMLV
F
GNMTDSFTKAEASILPSITNQ
SGPNSTLIISNSSLEEEMAIYAYYYTGIGAGVLIVAYIQVSLWCLAAG
R
QIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLT
DDVSKINDGIGDKIGMFFQSITTFLAGFIIGFISG
W
KLTLVILAVSPLIGLSSALWAK
VLTSFTNKELQAYAKAGAVAEEVLAAIRTVIAFGGQQKELERYNKNL
E
EAKNVGIKKAITASISIGIAYLLVYASYALAFWYGTSLVLSNEYSIGEVLT
VFFSILLGTFSIGHLAPN
I
EAFANARGAAFEIFKIIDN
EPSIDSFSTKGYKPDSIMGNLEFKNVHFNYPSRSEVQILKGLNLKVKSGQ
T
VALVGNSGCGKSTTVQLMQRLYDPLEGV
VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG
R
EDVTMDEIEKAVKEANAYDFIMKLPH
QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL
D
TESEAVVQAALDK
AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTR
G
NEIEPGNNAYGSQSDTDASELTSEESKSPLIRRSIYRSVHRKQDQERRLSMKEAV
DEDVPLVSFWRILN
L
NLSEWPYLLVGVLCAVINGCIQPVFAIVFSRIVG
VFSRDDDHETKRQNCNLFSLFFLVMGLISFVTYFF
Q
GFTFGKAGEILTKRVRYMVFKSMLRQDISWFDDHKNSTGSLTTRLASDASSVKGAMGARLAVVTQNVAN
L
GTGVILSLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKQLEISGK
IATEAIENFRTIVSLTR
E
QKFETMYAQSLQVPY
RNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVAQQLMTFENVMLVFSAVV
F
GAMAAGNTSSFAPDYAKAKVSASHIIRIIEKTPEIDSYSTEGLKP
TLLEGNVKFNGVQFNYPTRPNIPV
L
QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV
FLDGKEIKQLNVQWLRAHLGIVSQEPIL
F
DCSIAENIAYGDNSRAVSHEEIVRAAKEANIHQFIDSLPD
KYNTRVGDKGTQLSGGQKQRIAIARALVR
Q
PHILLLDEATSALDTESEK
VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLA
Q
KGIYFSMVQAGAKRS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser