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Report for CCDS19036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19036.1 Public Mus musculus 4 Ssu72 23 108 98 CCDS HistoryNCBI Gene:68991Re-query CCDS DB by CCDS ID:19036.1Re-query CCDS DB by GeneID:68991See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030905.8 ENSMUSP00000030905.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030905.8Link to Ensembl Protein Viewer:ENSMUSP00000030905.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030905Re-query CCDS DB by Protein ID:ENSMUSP00000030905
Original member Current member NCBI NM_026899.3 NP_081175.2 Accepted alive Link to Nucleotide Sequence:NM_026899.3Link to Protein Sequence:NP_081175.2Re-query CCDS DB by Nucleotide ID:NM_026899Re-query CCDS DB by Protein ID:NP_081175Link to BLAST:NP_081175.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081175.2 194 Q9CY97-1 194 100% 0 0

Chromosomal Locations for CCDS 19036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155705382 155705461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155715462 155715605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155731325 155731464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155731927 155732045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155733473 155733574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGCCGTCATCGCCGCTGCGGGTGGCGGTGGTGTGCTCGAGTAACCAGAATCGGAGCATGGAAGCACACA
ACATCCTCAGCAAGCGAGGTTTCAGTGTCCGCTCCTTTGGAACAGGAACTCATGTGAAGCTCCCAGGACC
AGCACCTGACAAGCCCAATGTTTATGACTTCAAAACCACATATGACCAGATGTACAATGACCTCCTCAGG
AAAGACAAAGAACTCTATACACAAAATGGAATTTTACATATGTTGGACAGAAATAAAAGGATCAAGCCCC
GTCCAGAAAGGTTCCAGAACTGCACGGACCTGTTTGACTTGATCCTCACTTGTGAAGAGAGAGTCTATGA
CCAGGTTGTAGAAGATCTGAACTCCAGAGAACAGGAGACCTGCCAGCCAGTGCATGTGGTCAATGTGGAC
ATCCAGGACAACCATGAAGAGGCCACTCTGGGAGCATTCCTTATCTGCGAGCTCTGCCAGTGTATCCAGC
ACACTGAGGACATGGAGAATGAAATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGGGCCTT
TCTGCATACTGTCTGCTTCTACTGA

Translation (194 aa):
MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR
KDKELYTQNGILHMLDRNKRIKPRPERFQNCTDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVD
IQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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